Publications of J. Liepe

Liepe, J.; Filippi, S.; Komorowski, M.; Stumpf, M. P. H.: Maximizing the information content of experiments in systems biology. PLoS Computational Biology 9 (1), e1002888 (2013)

Taylor, H. B.; Liepe, J.; Barthen, C.; Bugeon, L.; Huvet, M.; Kirk, P. D. W.; Brown, S. B.; Lamb, J. R.; Stumpf, M. P. H.; Dallman, M. J.: P38 and JNK have opposing effects on persistence of in vivo leukocyte migration in zebrafish. Immunology and Cell Biology 91 (1), pp. 60 - 69 (2013)

Liepe, J.; Taylor, H.; Barnes, C. P.; Huvet, M.; Bugeon, L.; Thorne, T.; Lamb, J. R.; Dallman, M. J.; Stumpf, M. P. H.: Calibrating spatio-temporal models of leukocyte dynamics against in vivo live-imaging data using approximate Bayesian computation. Integrative Biology 4 (3), pp. 335 - 345 (2012)

Zhou, Y.; Liepe, J.; Sheng, X.; Stumpf, M. P. H.; Barnes, C.: GPU accelerated biochemical network simulation. Bioinformatics 27 (6), pp. 874 - 876 (2011)

Liepe, J.; Barnes, C.; Cule, E.; Erguler, K.; Kirk, P.; Toni, T.; Stumpf, M. P. H.: ABC-SysBio-approximate Bayesian computation in Python with GPU support. Bioinformatics 26 (14), pp. 1797 - 1799 (2010)

Liepe, J.; Mishto, M.; Textoris-Taube, K.; Janek, K.; Keller, C.; Henklein, P.; Kloetzel, P. M.; Zaikin, A.: The 20S proteasome splicing activity discovered by SpliceMet. PLoS Computational Biology 6 (6), e1000830 (2010)

Liepe, J.; Stumpf, M. P. H.: ABC in systems biology. In: Handbook of approximate bayesian computation (Eds. Sisson, S. A.; Fan, Y.; Beaumont, M. A.) (2019)

Welp, L. M.; Sachsenberg, T.; Wulf, A.; Chernev, A.; Horokhovskyi, Y.; Neumann, P.; Pašen, M.; Siraj, A.; Raabe, M.; Johannsson, S. et al.; Schmitzova, J.; Netz, E.; Pfeuffer, J.; He, Y.; Fritzemeier, K.; Delanghe, B.; Viner, R.; Vos, S. M.; Cramer, P.; Ficner, R.; Liepe, J.; Kohlbacher, O.; Urlaub, H.: Chemical crosslinking extends and complements UV crosslinking in analysis of RNA/DNA nucleic acid–protein interaction sites by mass spectrometry. bioRxiv (2024)