Max Planck Institute for Multidisciplinary Sciences

Publications

Journal Article (13048)

1.

Journal Article

Coles, N. P.; Elsheikh, S.; Gouda, A.; Quesnel, A.; Butler, L.; Achadu, O. J.; Islam, M.; Kalesh, K.; Occhipinti, A.; Angione, C. et al.; Marles-Wright, J.; Koss, D. J.; Thomas, A. J.; Outeiro, T. F.; Filippou, P. S.; Khundakar, A. A.: A modified α-synuclein seed amplification assay in Lewy body dementia using Raman spectroscopy and machine learning analysis. Journal of Neuroscience Methods 425, 110617 (2026)

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Gogoi, S.; Pathak, S.; Goyary, S.; Das, A.; Hujuri, J.; Sahu, A.; Fuentes-Monteverde, J. C.; Nath, N.: Quantification of geometric isomers of citral and minor oleochemicals in Cymbopogon flexuosus (lemongrass) and Cymbopogon nardus (citronella) essential oils by ¹H qNMR method. Talanta 297 (Part B), 128708 (2026)

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Hindermann, M.; Daguano Gastaldi, V.; Wilke, J. B. H.; Ronnenberg, A.; Arinrad, S.; Kraus, S.; Ehrenreich, H.: Protocol for the preparation, execution, and automated analysis via IntelliR of IntelliCage-based mouse experiments. STAR Protocols 6 (4), 104246 (2025)

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Mazzeo, P.; Penir, S. M.; Shumilov, E.; Wolf, S.; Häupl, B.; Markus, K.; Shirneshan, K.; Rittscher, K.; Brzuszkiewicz, E.; Aydilek, E. et al.; Treiber, H.; Oellerich, T.; Ganster, C.; Haase, D.; Koch, R.: Clonal evolution and apoptosis resistance in myelodysplastic neoplasms and acute myeloid leukemia under treatment: insights from integrative longitudinal profiling. Leukemia 39, pp. 3026 - 3036 (2025)

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5.

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Rathore, S.; Conrad, J.; De Silva, D.; Ferrari, A.; Bouquio, D.; Kim, H.-J.; Salvatori, R.; Linden, A.; Dybkov, O.; Urlaub, H. et al.; Ott, M.; Barrientos, A.: The late stages of yeast mitoribosome large subunit biogenesis. Biochimica et Biophysica Acta (BBA) - Molecular Cell Research 1872 (8), 120051 (2025)

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Schiavina, M.; Joseph, D.; Griesinger, C.; Felli, I. C.; Pierattelli, R.: ¹⁵N optimal control pulses: an efficient approach to enhance heteronuclear-detected NMR experiments at high magnetic fields. Journal of Magnetic Resonance 381, 107972 (2025)

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7.

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Schrell, L.; Scheibner, D.; Dickmanns, A.; Stegmann, K. M.; Michaely, L. M.; Graaf-Rau, A.; Beer, P.; Parker, A.; Diederich, S.; Balkema-Buschmann, A. et al.; Dobbelstein, M.: Inhibitors of pyrimidine synthesis synergize with N4-hydroxycytidine to diminish influenza virus replication. Antiviral Research 244, 106286 (2025)

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8.

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Schwenzer, N.; Tsukanov, R.; Kohl, T.; Basak, S.; Sobitov, I.; Seibertz, F.; Kapoor, R.; Voigt, N.; Lehnart, S. E.: Nanoscale architecture and dynamics of Ca_V1.3 channel clusters in cardiac myocytes revealed by single channel nanoscopy. Journal of Molecular and Cellular Cardiology Plus 14, 100490 (2025)

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9.

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Ries, C.; Stark, T.; Boulat, B.; Ruhwedel, T.; Delling, J. P.; Infante, A. M.; von Poblotzki, J. T.; Ulivi, A.; von Mucke-Heim, I.-A.; Chang, S. et al.; Sakimura, K.; Itoi, K.; Nestvogel, D. B.; Attardo, A.; Czisch, M.; Nave, K.-A.; Möbius, W.; Dimou, L.; Deussing, J. M.: Neuropeptide CRH prevents premature differentiation of OPCs following CNS injury and in early postnatal development. Cell Reports 44 (11), 116474 (2025)

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10.

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Stumpf, D.; Jensen, N. A.; Mittelheisser, C.; Keller-Findeisen, J.; Chizhik, A. I.; Kamper, M.; Diekmann, T.; Habenstein, F.; Jansen, I.; Enderlein, J. et al.; Sliwa, M.; Inamdar, K.; Hell, S. W.; Jakobs, S.: The near-infrared bacteriophytochrome-derived fluorescent protein PENELOPE enables RESOLFT superresolution microscopy. Proceedings of the National Academy of Sciences of the United States of America 122 (48), e2504748122 (2025)

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11.

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Russo, L.; Dhar, D.; Backer, R.; Prakash, O.; Matroodi, F.; Overkamp, K.; Giller, K.; Becker, S.; Griesinger, C.; Willbold, D. et al.; Rossi, B.; Davari, M. D.; Rezaei-Ghaleh, N.: Direct detection of an NH-π hydrogen bond in an intrinsically disordered peptide. Nature Communications 16, 10231 (2025)

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12.

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Kirck, L. L.; Santagostino, E.; Brandhoff, L.; Simeth, N. A.; Tittmann, K.: Expected and Unexpected “Guests” at the Active Site of Human Orotidine 5′-Monophosphate Decarboxylase. Biochemistry 64 (22), pp. 4542 - 4554 (2025)

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13.

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Džajić, I.; Tomašič, T.; Pardo, L. A.; Peterlin Mašič, L.; Cotman, A. E.: Lipophilic Cations as Mitochondria-Targeting Moieties: Recent Progress and Design Principles for Medicinal Chemistry. Journal of Medicinal Chemistry (2025)

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Elbaum-Mendelson, L.; Yuan, W.; Seiler, J. P.-H.; Blom, N.; Chan, Y.-C.; Baig, A. H.; Brose, N.; Rumpel, S.; Ziv, N. E.: Revealing acute consequences of rapid degradation of synaptic fusion proteins at individual synapses using Auxin-Inducible Degron 2 technology. Communications Biology 8, 1589 (2025)

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15.

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Harikumar Parvathy, G.; Hertz, D.; Bhandiwad, D.; Eggers, L.; von Borstel, L.; Behrends, J.; Hein, M.; Dreyer, V.; Marschner, J.; Orinska, Z. et al.; Niemann, S.; Kaufmann, S. H. E.; Goldmann, T.; Lotter, H.; Flores-Valdez, M. A.; Schneider, B. E.: Sex Differences in Vaccine-Induced Immunity and Protection Against Mycobacterium tuberculosis. The Journal of Infectious Diseases 232 (15), pp. 1187 - 1197 (2025)

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Mimoso, T.; Korobeinikov, A.; Stein, A.; Milovanovic, D.; Rizzoli, S. O.; Köster, S.; Reshetniak, S.: Brain-derived synaptic vesicles have an intrinsic ability to sequester tubulin. BMC Biology 23, 340 (2025)

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17.

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Nikolova, V.; Linnemannstöns, K.; Bendel, M.-E.; Machado, M.; Ganter, B.; Budimir, P.; Vogts, M.; Fischer, C.; Ganter, M.; Meier, C. et al.; Dobbelstein, M.: Membrane-Permeable 5-Fluorodeoxyuridine Triphosphate Derivatives Inhibit the Proliferation of Plasmodium falciparum. ACS Infectious Diseases 11 (11), pp. 3138 - 3151 (2025)

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Aakhte, M.; Müller, G. F.; Roos, L.; Li, J.; Göpel, T.; Weiss, K. R.; Diniz, A. M.; Wenzel, J.; Schwaninger, M.; Moser, T. et al.; Huisken, J.: Isotropic, aberration-corrected light sheet microscopy for rapid high-resolution imaging of cleared tissue. Nature Biotechnology (2025)

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19.

Journal Article

Dringen, R.; Karger, G.; Winkler, U.; Hirrlinger, J.: ATP Metabolism of Astrocytes: Consumption, Regeneration and Restoration. Neurochemical Research 50, 357 (2025)

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20.

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Behera, S.; Gapsys, V.; de Groot, B. L.: Evaluation of the ABCG2 Charge Model in Protein–Ligand Binding Free-Energy Calculations. Journal of Chemical Information and Modeling 65 (21), pp. 11505 - 11509 (2025)

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21.

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Domingues, N.; Calcagni’, A.; Freire, S.; Pires, J.; Casqueiro, R.; Salazar, I. L.; Herz, N. J.; Huynh, T.; Wieciorek, K.; Outeiro, T. F. et al.; Girão, H.; Milosevic, I.; Ballabio, A.; Raimundo, N.: Loss of the lysosomal protein CLN3 triggers c-Abl-dependent YAP1 pro-apoptotic signaling. EMBO Reports (2025)

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22.

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Kapoor, R.; Kim, H.; Garlick, E.; Lima, M. A. d. R. B. F.; Esch, K.; Ruhwedel, T.; Möbius, W.; Wolf, F.; Moser, T.: Charting the nanotopography of inner hair cell synapses using MINFLUX nanoscopy. Science Advances 11 (45), eady4344 (2025)

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23.

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Leha, A.; Neef, N. E.; Dickhut, S.; Ponssen, D.; Primassin, A.; Korzeczek-Opitz, A.; Joseph, A. A.; Frahm, J.; Sommer, M.: Cluster analysis of articulatory trajectories in fluent nonword productions separates adults who stutter from fluent speakers. Scientific Reports 15, 38465 (2025)

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24.

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Rodriguez, G. G.; Mei, R.; Fries, L. M.; Glöggler, S.: ¹⁵ N Reaction Monitoring at Low and Inhomogeneous Magnetic Fields Enabled by Hyperpolarization with Parahydrogen. Chemistry - A European Journal (2025)

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25.

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Scodellaro, R.; Kulkarni, A.; Alves, F.; Schröter, M.: Training convolutional neural networks with the Forward–Forward Algorithm. Scientific Reports 15, 38461 (2025)

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26.

Journal Article

Arangasamy, Y.; Morice, É.; Jochheim, A.; Lieser, B.; Söding, J.: Evaluation of metagenome binning: advances and challenges. Bioinformatics 26 (6), bbaf617 (2025)

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27.

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Asadollahi, R.; Ahmad, A.; Boonsawat, P.; Shahanoor Hinzen, J.; Lohse, M.; Bouazza-Arostegui, B.; Sun, S.; Utesch, T.; Sommer, J. D.; Ilic, D. et al.; Padmanarayana, M.; Fischermanns, K.; Ranjan, M.; Boll, M.; Ka, C.; Piton, A.; Mattioli, F.; Isidor, B.; Õunap, K.; Reinson, K.; Wojcik, M. H.; Marshall, C. R.; Mercimek-Andrews, S.; Matsumoto, N.; Miyake, N.; Stephan, B. d. O.; Honjo, R. S.; Bertola, D. R.; Kim, C. A.; Yusupov, R.; Mefford, H. C.; Christodoulou, J.; Lee, J.; Heath, O.; Brown, N. J.; Baker, N.; Stark, Z.; Delatycki, M.; Lake, N. J.; Zeidler, S.; Zuurbier, L.; Maas, S. M.; de Kruiff, C. C.; Rajabi, F.; Rodan, L. H.; Coury, S. A.; Platzer, K.; Oppermann, H.; Abou Jamra, R.; Beblo, S.; Maxton, C.; Śmigiel, R.; Underhill, H.; Dubbs, H.; Rosen, A.; Helbig, K. L.; Helbig, I.; Ruggiero, S. M.; Fitzgerald, M. P.; Kraemer, D.; Prada, C. E.; Tenney, J.; Jayakar, P.; Redon, S.; Lefranc, J.; Uguen, K.; Race, S.; Efthymiou, S.; Maroofian, R.; Houlden, H.; Coppens, S.; Deconinck, N.; Ashokkumar, B.; Varalakshmi, P.; Gowda K, V. R.; Eghbal, F.; Ghayoor Karimiani, E.; Heidari, M.; Neidhardt, J.; Owczarek-Lipska, M.; Korenke, G. C.; Bamshad, M. J.; Campeau, P. M.; Lehman, A.; Hendon, L. G.; Wentzensen, I. M.; Monaghan, K. G.; Chen, Y.; Szuto, A.; Cohn, R. D.; Au, P. Y. B.; Hübner, C.; Boschann, F.; Manickam, K.; Koboldt, D. C.; Rad, A.; Oprea, G.; Bachman, K. K.; Seeley, A. H.; Agolini, E.; Terracciano, A.; Carmelo, P.; Bupp, C.; Grysko, B.; Rein-Rothschild, A.; Ben Zeev, B.; Margolin, A.; Morrison, J.; Dagli, A.; Stolerman, E.; Louie, R. J.; Washington, C.; Stevens, S. J. C.; Heijligers, M.; Alkuraya, F. S.; Lisfeld, J.; Neu, A.; Paoli Monteiro, F.; Santos Pessoa, A. L.; Camelo-Filho, A. E.; Kok, F.; Koeberl, D.; Riley, K.; Burglen, L.; Doummar, D.; Héron, B.; Mignot, C.; Keren, B.; Charles, P.; Nava, C.; Bernhard, F. P.; Kühn, A. A.; Thoms, S.; Morrie, R. D.; Mekhoubad, S.; Green, E. M.; Barmada, S. J.; Gitler, A. D.; Jahn, O.; Rhee, J. S.; Rosenmund, C.; Mitkovski, M.; Sticht, H.; Sun, H.; Le Gac, G.; Taschenberger, H.; Brose, N.; Dittman, J. S.; Rauch, A.; Lipstein, N.: Pathogenic UNC13A variants cause a neurodevelopmental syndrome by impairing synaptic function. Nature Genetics 57, pp. 2691 - 2704 (2025)

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28.

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Ayoub, S.; Arabi, M.; Al-Najjar, Y.; Laswi, I.; Outeiro, T. F.; Chaari, A.: Glycation in Alzheimer’s Disease and Type 2 Diabetes: The Prospect of Dual Drug Approaches for Therapeutic Interventions. Molecular Neurobiology 62, pp. 14859 - 14882 (2025)

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29.

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Herbsleb, L.; Wild, D.; Gröger, H.; Schubert, T.; Steyer, A. M.; Hennies, J.; Alves, F.; Feldmann, C.; Walter, A.: 3D correlative light and electron microscopy reveals the uptake and processing of inorganic-organic hybrid nanoparticles into cancer cells. Nanomedicine: Nanotechnology, Biology and Medicine 70, 102872 (2025)

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30.

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O'Donnell, L.; Rodriguez, G. G.; Lemberskiy, G.; Yu, Z.; Dergachyova, O.; Cloos, M.; Madelin, G.: Correlation-Weighted ²³Na Magnetic Resonance Fingerprinting in the Brain. NMR in Biomedicine 38 (11), e70150 (2025)

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31.

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Outeiro, T. F.; Höglinger, G.; Lang, A. E.; Vieira, T. C. R. G.: Protein misfolding: understanding biology to classify and treat synucleinopathies. Journal of Neural Transmission 132, pp. 1645 - 1654 (2025)

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32.

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Rodriguez, G. G.; von Petersdorff-Campen, C.; Korchak, S.; Sucre, O.; Santi, M. D.; Elsasser, J.; Mei, R.; Fries, L. M.; Felger, J.; Markus, A. et al.; Alves, F.; Glöggler, S.: Biological J-Coupling Spectroscopy at Low Magnetic Field. Small Science 5 (11), 2500268 (2025)

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33.

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Triñanes-Ramos, J.; Bugiani, M.; van Rooijen-van Leeuwen, G. M.; Chevalier, J. A.; Siu, Y. J.; van Utenhove, E. L. H.; Hoogterp, L.; Witkamp, D.; Oudejans, E.; Lodder, B. et al.; Kole, M. H. P.; Saher, G.; Nave, K.-A.; Abbink, T. E. M.; van der Knaap, M. S.: Cell-specific Eif2b5 mutant mice: novel insights into roles of macroglia in vanishing white matter. Brain 148 (11), pp. 4112 - 4126 (2025)

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34.

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Jung, H.; Kim, B.; Jang, G.; Lee, H.; Kim, Y.; Kim, H.; Lee, H. J.; Kim, D.; Yang, Y.; Jeong, W. C. et al.; Kim, S.; Han, A.-r.; Kim, H. M.; Papadopoulos, T.; Durand, B.; Francannet, C.; Piton, A.; Kim, J. Y.; Ko, J.; Um, J. W.: Autism-associated ARHGEF9 variants impair GABAergic synapses and ultrasonic communication by reducing gephyrin phosphorylation. Molecular Psychiatry (2025)

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Krueger, G.; Meesaragandla, B.; Schultze, L.; Pape, K.; Zedler, U.; Stooß, G.; Faisal, S.; Franzke, K.; Barth, S. A.; Janke, U. et al.; Kaufmann, S. H. E.; Corleis, B.; Delcea, M.; Dorhoi, A.: Modeling immune responses of cattle to Mycobacterium bovis using magnetic bioprinted granulomas. mSphere (2025)

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36.

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Lee, S.-J.; Schillings, J.; de Vries, R.; Matamoros, M.; de Groot, B. L.; Nichols, C. G.: From selective permeation to physiology in potassium channels. Function (2025)

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37.

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Zhang, L.; Li, C.; Schwarzer, M.; Borodin, D.; Wodtke, A. M.; Guo, H.: Nuclear Quantum Effects in OH*/OD* Formation Kinetics on Pd(332): A Ring-Polymer Molecular Dynamics Study. The Journal of Physical Chemistry Letters 16 (43), pp. 11175 - 11182 (2025)

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38.

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Feng, R.; Spieth, L.; Liu, L.; Berghoff, S.; Franz, J.; Liu, Q.; Wang, Z.; Tiwari, V.; Vitale, S.; Frerich, S. et al.; Florensa, S.; Junker, N.; Huber, L.; Keller, M.; Müller, C.; Bracher, F.; Ge, X.; Rensen, P. C.N.; Kooij, G.; Hosang, L.; Chornyi, S.; Dichgans, M.; Gokce, O.; Saher, G.; Stadelmann, C.; Giera, M.; Groh, J.; Simons, M.: Single-cell spatial transcriptomic profiling defines a pathogenic inflammatory niche in chronic active multiple sclerosis lesions. Immunity (2025)

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39.

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Ghosh Dastidar, N.; Freyer, N. S.; Petrychenko, V.; de A. P. Schwarzer, A. C.; Peng, B.-Z.; Samatova, E.; Kothe, C.; Schmidt, M.; Peske, F.; Politi, A. Z. et al.; Urlaub, H.; Fischer, N.; Rodnina, M. V.; Wohlgemuth, I.: Selective silencing of antibiotic-tethered ribosomes as a resistance mechanism against aminoglycosides. Nature Communications 16, 9568 (2025)

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40.

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Walshe, J. L.; Ochmann, M.; Neef, U.; Dybkov, O.; Dienemann, C.; Oberthür, C.; Zheenbekova, A.; Urlaub, H.; Cramer, P.: Molecular mechanism of co-transcriptional H3K36 methylation by SETD2. Nature Communications 16, 9565 (2025)

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41.

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Fernandez Flores, L. C.; Younas, N.; Goebel, S.; Dittmar, K.; Saleem, T.; Younas, A.; Budde, H.; Legler, T. J.; Möbius, W.; Hermann, P. et al.; Schmitz, M.; Zerr, I.: Multiple Antibody-Coated Gold Nanoparticle-Based ExoAssay for Rapid Isolation of CNS-Specific Exosomes From Blood. Journal of Neurochemistry 169 (10), e70263 (2025)

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42.

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Kraft, L.; Söding, J.; Steinegger, M.; Jochheim, A.; Wad Sackett, P.; Fernandez-Guerra, A.; Renaud, G.: CarpeDeam: a de novo metagenome assembler for heavily damaged ancient datasets. Genome Biology 26, 372 (2025)

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43.

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Mauksch, C.; Zhu, Y.; Velychko, T.; Sagropoulou, S.; Aljahani, A.; Ramasamy, S.; Žumer, K.; Oudelaar, A. M.: FACT depletion demonstrates a role for nucleosome organization in TAD formation. Molecular Systems Biology (2025)

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44.

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Fan, X.; Gao, Z.; Zhong, J.; Chen, Y.; Chen, X.; Landegger, L. D.; Moser, T.; Zeng, F.-G.; Sun, Y.; Jin, X. et al.; Nash, R.; Chien, W. W.; Jiang, D.; Greinwald, J. H.; Bance, M.; Rodríguez, M. M.; Lee, S.-Y.; Feng, G.; Yang, H.; Wu, C.-C.; Xu, L.; Yuan, W.; Feng, Y.; Zhao, Y.; Vona, B.; Strenzke, N.; Beutner, D.; Amin, N.; Arwyn-Jones, J.; Chandrasekeharan, D.; Shi, D.; Zhang, D.; Yang, J.; Qi, J.; Wang, Q.; Yin, Y.; Cheng, Y.-F.; Tao, Y.; Yu, Y.; Wang, D.; Jiang, L.; Guo, L.; Chen, L.; Cheng, X.; Cui, C.; Lv, J.; Han, S.; Wang, W.; Li, Y.; Gao, X.; Liu, X. Z.; Zha, D.; Shi, H.; Chen, B.; Wang, Q.; Yuan, H.; Yang, S.; Yin, S.; Wu, H.; Wang, Z.; Li, H.; Rubinstein, J. T.; Lustig, L. R.; Chai, R.; Chen, Z.-Y.; Shu, Y.: International expert consensus on gene therapy for hereditary hearing loss: Based on clinical trials. Med, 100886 (2025)

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45.

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Reinhard, M.; van der Ham, A.; Yang, L.; Bröker, L.; Orlando, T.; Tkach, I.; Levien, M.; Bennati, M.: Enhancing NMR Signals in Liquids by Fluorine‐19 Overhauser Dynamic Nuclear Polarization (DNP) and Hyperpolarization Transfer to Carbon‐13. Angewandte Chemie International Edition (2025)

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46.

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Vasili, E.; König, A.; Al-Azzani, M.; Bosbach, C.; Gatzemeier, L. M.; Thom, S.; Chegão, A.; Miranda, H. V.; Steinem, C.; Erskine, D. et al.; Outeiro, T. F.: Glycation of alpha-synuclein enhances aggregation and neuroinflammatory responses. npj Parkinson's Disease 11, 307 (2025)

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47.

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Avilov, I.; Horokhovskyi, Y.; Mehta, P.; Welp, L.; Jakobi, J.; Cai, M.; Orzechowski, A.; Urlaub, H.; Liepe, J.; Lenart, P.: Phosphoproteomic identification of Mos–MAPK targets in meiotic cell cycle and asymmetric oocyte divisions. Journal of Cell Biology 224 (12), e202312140 (2025)

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48.

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Dullin, C.; Reiser, J.; Wagner, W. L.; Longo, E.; Prašek, M.; Contillo, A.; Sodini, N.; Dreossi, D.; Confalonieri, P.; Salton, F. et al.; Confalonieri, M.; Baratella, E.; Cova, M. A.; Benke, C. V.; Sagar, M. M. R.; D’Amico, L.; Albers, J.; Svetlove, A.; Duke, E.; Flisikowska, T.; Flisikowski, K.; Wielpütz, M. O.; Biederer, J.; Kauczor, H.-U.; Alves, F.; Zanconati, F.; Tromba, G.: Formaldehyde vapour fixation enables multiscale phase-contrast imaging and histological validation of human-sized lungs. Scientific Reports 15, 36475 (2025)

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49.

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Karagulyan, N.; Überegger, M.; Qi, Y.; Babai, N.; Hofer, F.; Johnson Chacko, L.; Wang, F.; Luque, M.; Glueckert, R.; Schrott-Fischer, A. et al.; Hua, Y.; Moser, T.; Bandtlow, C.: Probing the role of synaptic adhesion molecule RTN4RL2 in setting up cochlear connectivity. eLife 14, RP103481 (2025)

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50.

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Methorst, J.; Verwei, N.; Hoffmann, C.; Chodnicki, P.; Sansevrino, R.; Pyne, P.; Wang, H.; van Hilten, N.; Aschmann, D.; Kros, A. et al.; Andreas, L. B.; Czub, J.; Milovanovic, D.; Risselada, H. J.: Physics-based evolution of transmembrane helices reveals mechanisms of cholesterol attraction. Nature Communications 16, 9275 (2025)

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