Publications

Journal Article (12511)

1.
Journal Article
Jeong, S.; Lee, B.-Y.; Rhee, J. S.; Lee, J.-H.: G protein β subunits regulate Cav3.3 T-type channel activity and current kinetics via interaction with the Casubv3.3 C-terminus. Biochimica et Biophysica Acta: BBA 1866 (6), 184337 (2024)
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Agorku, D. J.; Bosio, A.; Alves, F.; Ströbel, P.; Hardt, O.: Colorectal cancer-associated fibroblasts inhibit effector T cells via NECTIN2 signaling. Cancer Letters 595, 216985 (2024)
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3.
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Blackburn, D. M.; Sahinyan, K.; Hernández-Corchado, A.; Lazure, F.; Richard, V.; Raco, L.; Perron, G.; Zahedi, R. P.; Borchers, C. H.; Lepper, C. et al.; Kawabe, H.; Jahani-Asl, A.; Najafabadi, H. S.; Soleimani, V. D.: The E3 ubiquitin ligase Nedd4L preserves skeletal muscle stem cell quiescence by inhibiting their activation. iScience 27 (7), 110241 (2024)
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4.
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Komar, A.A.; Samatova, E.; Rodnina, M. V.: Translation Rates and Protein Folding. Journal of Molecular Biology 436 (14), 168384 (2024)
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5.
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Cunha, C.; Hoole, P.; Voit, D.; Frahm, J.; Harrington, J.: The physiological basis of the phonologization of vowel nasalization: A real-time MRI analysis of American and Southern British English. Journal of Phonetics 105, 101329 (2024)
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6.
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Ukmar‐Godec, T.; Yu, T.; de Opakua, A. I.; Pantoja, C. F.; Munari, F.; Zweckstetter, M.: Conformational diversity of human HP1α. Protein Science 33 (7), e5079 (2024)
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7.
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Wilson, C. J.; de Groot, B. L.; Gapsys, V.: Resolving coupled pH titrations using alchemical free energy calculations. Journal of Computational Chemistry 45 (17), pp. 1444 - 1455 (2024)
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8.
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Sabour, B.; Wagner, R. J. V.; Krüger, B. C.; Kandratsenka, A.; Wodtke, A. M.; Schäfer, T.; Park, G. B.: Vibrationally Mode-Specific Molecular Energy Transfer to Surface Electrons in Metastable Formaldehyde Scattering from Cesium-Covered Au(111). The Journal of Physical Chemistry A 128 (25), pp. 4976 - 4983 (2024)
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9.
Journal Article
Zhang, Z.; Kumar, V.; Dybkov, O.; Will, C. L.; Zhong, J.; Ludwig, S. E. J.; Urlaub, H.; Kastner, B.; Stark, H.; Lührmann, R.: Structural insights into the cross-exon to cross-intron spliceosome switch. Nature 630, pp. 1012 - 1019 (2024)
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10.
Journal Article
Lawson, C. L.; Kryshtafovych, A.; Pintilie, G. D.; Burley, S. K.; Černý, J.; Chen, V. B.; Emsley, P.; Gobbi, A.; Joachimiak, A.; Noreng, S. et al.; Prisant, M. G.; Read, R. J.; Richardson, J. S.; Rohou, A. L.; Schneider, B.; Sellers, B. D.; Shao, C.; Sourial, E.; Williams, C. I.; Williams, C. J.; Yang, Y.; Abbaraju, V.; Afonine, P. V.; Baker, M. L.; Bond, P. S.; Blundell, T. L.; Burnley, T.; Campbell, A.; Cao, R.; Cheng, J.; Chojnowski, G.; Cowtan, K. D.; DiMaio, F.; Esmaeeli, R.; Giri, N.; Grubmüller, H.; Hoh, S. W.; Hou, J.; Hryc, C. F.; Hunte, C.; Igaev, M.; Joseph, A. P.; Kao, W.-C.; Kihara, D.; Kumar, D.; Lang, L.; Lin, S.; Subramaniya, S. R. M. V.; Mittal, S.; Mondal, A.; Moriarty, N. W.; Muenks, A.; Murshudov, G. N.; Nicholls, R. A.; Olek, M.; Palmer, C. M.; Perez, A.; Pohjolainen, E.; Pothula, K. R.; Rowley, C. N.; Sarkar, D.; Schäfer, L. U.; Schlicksup, C. J.; Schröder, G. F.; Shekhar, M.; Si, D.; Singharoy, A.; Sobolev, O. V.; Terashi, G.; Vaiana, A. C.; Vedithi, S. C.; Verburgt, J.; Wang, X.; Warshamanage, R.; Winn, M. D.; Weyand, S.; Yamashita, K.; Zhao, M.; Schmid, M. F.; Berman, H. M.; Chiu, W.: Outcomes of the EMDataResource cryo-EM Ligand Modeling Challenge. Nature Methods (2024)
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11.
Journal Article
Nkeh, Y. B.; Elgin, R. G.; Saher, G.: From the unknown to spotlight: newly identified hormone adjusts hepatic cholesterol synthesis to dietary uptake. Signal Transduction and Targeted Therapy 9, 165 (2024)
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12.
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Harasimov, K.; Gorry, R. L.; Welp, L. M.; Penir, S. M.; Horokhovskyi, Y.; Cheng, S.; Takaoka, K.; Stützer, A.; Frombach, A.-S.; Taylor Tavares, A. L. et al.; Raabe, M.; Haag, S.; Saha, D.; Grewe, K.; Schipper, V.; Rizzoli, S. O.; Urlaub, H.; Liepe, J.; Schuh, M.: The maintenance of oocytes in the mammalian ovary involves extreme protein longevity. Nature Cell Biology (2024)
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13.
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Lee, J.-R.; Boothe, T.; Mauksch, C.; Thommen, A.; Rink, J. C.: Epidermal turnover in the planarian Schmidtea mediterranea involves basal cell extrusion and intestinal digestion. Cell Reports, 114305 (2024)
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14.
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Nimerovsky, E.; Kosteletos, S.; Lange, S.; Becker, S.; Lange, A.; Andreas, L. B.: Homonuclear Simplified Preservation of Equivalent Pathways Spectroscopy. The Journal of Physical Chemistry Letters 15 (24), pp. 6272 - 6278 (2024)
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15.
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Gargareta, V.-I.; Berghoff, S. A.; Krauter, D.; Hümmert, S.; Marshall‐Phelps, K. L. H.; Möbius, W.; Nave, K.-A.; Fledrich, R.; Werner, H. B.; Eichel-Vogel, M. A.: Myelinated peripheral axons are more vulnerable to mechanical trauma in a model of enlarged axonal diameters. Glia (2024)
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16.
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Hahn, D. F.; Gapsys, V.; de Groot, B. L.; Mobley, D. L.; Tresadern, G.: Current State of Open Source Force Fields in Protein–Ligand Binding Affinity Predictions. Journal of Chemical Information and Modeling (2024)
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17.
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Fries, L.; Hune, T. L. K.; Sternkopf, S.; Mamone, S.; Schneider, K. L.; Schulz-Heddergott, R.; Becker, D.; Glöggler, S.: Real-Time Metabolic Magnetic Resonance Spectroscopy of Pancreatic and Colon Cancer Tumor-Xenografts with Parahydrogen Hyperpolarized 1-13C Pyruvate-d3. Chemistry – A European Journal (2024)
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18.
Journal Article
Kim, D.; Bossi, M. L.; Belov, V. N.; Hell, S. W.: Supramolecular Complex of Cucurbit[7]uril with Diketopyrrolopyrole Dye: Fluorescence Boost, Biolabeling and Optical Microscopy. Angewandte Chemie International Edition (2024)
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19.
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Christensen, D. V.; Staub, U.; Devidas, T. R.; Kalisky, B.; Nowack, K. C.; Webb, J. L.; Andersen, U. L.; Huck, A.; Broadway, D. A.; Wagner, K. et al.; Maletinsky, P.; van der Sar, T.; Du, C. R.; Yacoby, A.; Collomb, D.; Bending, S.; Oral, A.; Hug, H. J.; Mandru, A.-O.; Neu, V.; Schumacher, H. W.; Sievers, S.; Saito, H.; Khajetoorians, A. A.; Hauptmann, N.; Baumann, S.; Eichler, A.; Degen, C. L.; McCord, J.; Vogel, M.; Fiebig, M.; Fischer, P.; Hierro-Rodriguez, A.; Finizio, S.; Dhesi, S. S.; Donnelly, C.; Büttner, F.; Kfir, O.; Hu, W.; Zayko, S.; Eisebitt, S.; Pfau, B.; Frömter, R.; Kläui, M.; Yasin, F. S.; McMorran, B. J.; Seki, S.; Yu, X.; Lubk, A.; Wolf, D.; Pryds, N.; Makarov, D.; Poggio, M.: 2024 roadmap on magnetic microscopy techniques and their applications in materials science. Journal of Physics: Materials 7 (3), 032501 (2024)
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20.
Journal Article
Ferrari, D. P.; Ramos Gomes, F.; Alves, F.; Markus, M. A.: KPC-luciferase-expressing cells elicit an anti-tumor immune response in a mouse model of pancreatic cancer. Scientific Reports 14, 13602 (2024)
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21.
Journal Article
Day, J.; Tirard, M.; Brose, N.: Deletion of a core APC/C component reveals APC/C function in regulating neuronal USP1 levels and morphology. Frontiers in Molecular Neuroscience 17, 1352782 (2024)
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22.
Journal Article
Lin, J.; Zhang, H.; Asadi, M.; Zhao, K.; Yang, L.; Fan, Y.; Zhu, J.; Liu, Q.; Sun, L.; Xie, W.J. et al.; Duan, C.; Mo, F.; Dou, J.-H.: Machine Learning-Driven Discovery and Structure–Activity Relationship Analysis of Conductive Metal–Organic Frameworks. Chemistry of Materials 36 (11), pp. 5436 - 5445 (2024)
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23.
Journal Article
Ort, L.; Röder, L. L.; Parchatka, U.; Königstedt, R.; Crowley, D. J.; Kunz, F.; Wittkowski, R.; Lelieveld, J.; Fischer, H.: In-flight characterization of a compact airborne quantum cascade laser absorption spectrometer. Atmospheric Measurement Techniques 17 (11), pp. 3553 - 3565 (2024)
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24.
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Jäger, N.; Pöhlmann, S.; Rodnina, M. V.; Ayyub, S. A.: Interferon-Stimulated Genes that Target Retrovirus Translation. Viruses 16 (6), 933 (2024)
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25.
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Borisova, E.; Newman, A. G.; Couce Iglesias, M.; Dannenberg, R.; Schaub, T.; Qin, B.; Rusanova, A.; Brockmann, M.; Koch, J.; Daniels, M. et al.; Turko, P.; Jahn, O.; Kaplan, D. R.; Rosário, M.; Iwawaki, T.; Spahn, C. M. T.; Rosenmund, C.; Meierhofer, D.; Kraushar, M. L.; Tarabykin, V.; Ambrozkiewicz, M. C.: Protein translation rate determines neocortical neuron fate. Nature Communications 15, 4879 (2024)
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26.
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Foerster, S.; Floriddia, E. M.; van Bruggen, D.; Kukanja, P.; Hervé, B.; Cheng, S.; Kim, E.; Phillips, B. U.; Heath, C. J.; Tripathi, R. B. et al.; Call, C.; Bartels, T.; Ridley, K.; Neumann, B.; López-Cruz, L.; Crawford, A. H.; Lynch, C. J.; Serrano, M.; Saksida, L.; Rowitch, D. H.; Möbius, W.; Nave, K.-A.; Rasband, M. N.; Bergles, D. E.; Kessaris, N.; Richardson, W. D.; Bussey, T. J.; Zhao, C.; Castelo-Branco, G.; Franklin, R. J. M.: Developmental origin of oligodendrocytes determines their function in the adult brain. Nature Neuroscience (2024)
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27.
Journal Article
Bandyra, K. J.; Fröhlich, K. S.; Vogel, J.; Rodnina, M. V.; Goyal, A.; Luisi, B.: Cooperation of regulatory RNA and the RNA degradosome in transcript surveillance. Nucleic Acids Research, gkae455 (2024)
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28.
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Erdmann, L.; Santos, P.; Rieper, P.; Klafki, H. W.; Beutner, D.; Wiltfang, J.; Outeiro, T. F.; Setz, C.: Automated Capillary Electrophoresis Immunoblot for the Detection of Alpha-Synuclein in Mouse Tissue. Journal of Parkinson's Disease: JPD 14 (4), pp. 681 - 692 (2024)
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29.
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Solà Colom, M.; Fu, Z.; Gunkel, P.; Güttler, T.; Trakhanov, S.; Srinivasan, V.; Gregor, K.; Pleiner, T.; Görlich, D.: A checkpoint function for Nup98 in nuclear pore formation suggested by novel inhibitory nanobodies. The EMBO Journal 43 (11), pp. 2198 - 2232 (2024)
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30.
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Vona, B.; Wollnik, B.; Strenzke, N.; Moser, T.: Catching up but still miles behind—a patient registry for otoferlin. Experimental and Molecular Medicine (2024)
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31.
Journal Article
Bock, L. V.; Igaev, M.; Grubmüller, H.: Single-particle Cryo-EM and molecular dynamics simulations: A perfect match. Current Opinion in Structural Biology 86, 102825 (2024)
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32.
Journal Article
Chatterjee, M.; Özdemir, S.; Fritz, C.; Möbius, W.; Kleineidam, L.; Mandelkow, E.; Biernat, J.; Doğdu, C.; Peters, O.; Cosma, N.C. et al.; Wang, X.; Schneider, L.-S.; Priller, J.; Spruth, E.; Kühn, A.A.; Krause, P.; Klockgether, T.; Vogt, I.R.; Kimmich, O.; Spottke, A.; Hoffmann, D.C.; Fliessbach, K.; Miklitz, C.; McCormick, C.; Weydt, P.; Falkenburger, B.; Brandt, M.; Guenther, R.; Dinter, E.; Wiltfang, J.; Hansen, N.; Bähr, M.; Zerr, I.; Flöel, A.; Nestor, P.J.; Düzel, E.; Glanz, W.; Incesoy, E.; Bürger, K.; Janowitz, D.; Perneczky, R.; Rauchmann, B.S.; Hopfner, F.; Wagemann, O.; Levin, J.; Teipel, S.; Kilimann, I.; Goerss, D.; Prudlo, J.; Gasser, T.; Brockmann, K.; Mengel, D.; Zimmermann, M.; Synofzik, M.; Wilke, C.; Selma-González, J.; Turon-Sans, J.; Santos-Santos, M.A.; Alcolea, D.; Rubio-Guerra, S.; Fortea, J.; Carbayo, Á.; Lleó, A.; Rojas-García, R.; Illán-Gala, I.; Wagner, M.; Frommann, I.; Roeske, S.; Bertram, L.; Heneka, M.T.; Brosseron, F.; Ramirez, A.; Schmid, M.; Beschorner, R.; Halle, A.; Herms, J.; Neumann, M.; Barthélemy, N.R.; Bateman, R.J.; Rizzu, P.; Heutink, P.; Dols-Icardo, O.; Höglinger, G.; Hermann, A.; Schneider, A.: Plasma extracellular vesicle tau and TDP-43 as diagnostic biomarkers in FTD and ALS. Nature Medicine 30 (6), pp. 1771 - 1783 (2024)
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33.
Journal Article
Davies, L. R. L.; Wang, C.; Steigler, P.; Bowman, K. A.; Fischinger, S.; Hatherill, M.; Fisher, M.; Mbandi, S. K.; Rodo, M.; Ottenhoff, T. H. M. et al.; Dockrell, H. M.; Sutherland, J. S.; Mayanja-Kizza, H.; Boom, W. H.; Walzl, G.; Kaufmann, S. H. E.; Nemes, E.; Scriba, T. J.; Lauffenburger, D.; Alter, G.; Fortune, S. M.: Age and sex influence antibody profiles associated with tuberculosis progression. Nature Microbiology 9, pp. 1513 - 1525 (2024)
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34.
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Forster, M. C.; Tekwani Movellan, K.; Najbauer, E. É.; Becker, S.; Andreas, L. B.: Magic-angle spinning NMR structure of Opa60 in lipid bilayers. Journal of Structural Biology: X 9, 100098 (2024)
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35.
Journal Article
Kremer, L. S.; Rehling, P.: Coordinating mitochondrial translation with assembly of the OXPHOS complexes. Human Molecular Genetics 33 (R1), pp. R47 - R52 (2024)
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36.
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Leneva, N.; Kovtun, O.: The commander complex is the Swiss Army knife of endosomal trafficking. Nature Structural & Molecular Biology 31, pp. 856 - 858 (2024)
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37.
Journal Article
Outeiro, T. F.; Antonini, A.; Ferreira, J. J.: Reply to: “Rethinking Parkinson's Disease: A Syndromic Perspective”. Movement Disorders 39 (6), pp. 1080 - 1081 (2024)
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38.
Journal Article
Outeiro, T. F.; Kalia, L. V.; Bezard, E.; Ferrario, J.; Lin, C.-H.; Salama, M.; Standaert, D. G.; Taiwo, L.; Takahashi, R.; Vila, M. et al.; Mollenhauer, B.; Svenningsson, P.; The MDS Basic Science Special Interest Group Steering Committe: Basic Science in Movement Disorders: Fueling the Engine of Translation into Clinical Practice. Movement Disorders 39 (6), pp. 929 - 933 (2024)
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39.
Journal Article
Proksch, K.; Werner, F.; Keller-Findeisen, J.; Ta, H.; Munk, A.: Toward quantitative super-resolution microscopy: molecular maps with statistical guarantees. Microscopy 73 (3), pp. 287 - 300 (2024)
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40.
Journal Article
Reich, M.; Simon, M. J.; Polke, B.; Paris, I.; Werner, G.; Schrader, C.; Spieth, L.; Davis, S. S.; Robinson, S.; de Melo, G. L. et al.; Schlaphoff, L.; Buschmann, K.; Berghoff, S.; Logan, T.; Nuscher, B.; de Weerd, L.; Edbauer, D.; Simons, M.; Suh, J. H.; Sandmann, T.; Kariolis, M. S.; DeVos, S. L.; Lewcock, J. W.; Paquet, D.; Capell, A.; Di Paolo, G.; Haass, C.: Peripheral expression of brain-penetrant progranulin rescues pathologies in mouse models of frontotemporal lobar degeneration. Science translational medicine 16 (750), eadj7308 (2024)
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Roth, C.; Heyde, C.-E.; Schumann, E.; Voit, D.; Frahm, J.; Hirsch, F. W.; Anders, R.; Gräfe, D.: As fast as an X-ray: real-time magnetic resonance imaging for diagnosis of idiopathic scoliosis in children and adolescents. Pediatric Radiology 54, pp. 1168 - 1179 (2024)
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42.
Journal Article
Senyushkina, T.; Samatova, E.; Klimova, M.; Rodnina, M. V.: Kinetics of programmed and spontaneous ribosome sliding along the mRNA. Nucleic Acids Research 52 (11), pp. 6507 - 6517 (2024)
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43.
Journal Article
Synanidis, A. P.; Gonçalves, P. A. D.; Ropers, C.; de Abajo, F. J. G.: Quantum effects in the interaction of low-energy electrons with light. Science Advances 10 (25), eadp4096 (2024)
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44.
Journal Article
Vanegas, L. J.; Eltzner, B.; Rudolf, D.; Dura, M.; Lehnart, S. E.; Munk, A.: Analyzing cross-talk between superimposed signals: Vector norm dependent hidden Markov models and applications to ion channels. The Annals of Applied Statistics 18 (2), pp. 1445 - 1470 (2024)
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45.
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Vučković, A.; Freyer, C.; Wredenberg, A.; Hillen, H. S.: The molecular machinery for maturation of primary mtDNA transcripts. Human Molecular Genetics 33 (R1), pp. R19 - R25 (2024)
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46.
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Wirths, O.; Lehnen, C.; Fricke, M.; Talucci, I.; Klafki, H.-W.; Morgado, B.; Lehmann, S.; Münch, C.; Liepold, T.; Wiltfang, J. et al.; Rostagno, A.; Ghiso, J.; Maric, H. M.; Jahn, O.; Weggen, S.: Amino-terminally elongated Aβ peptides are generated by the secreted metalloprotease ADAMTS4 and deposit in a subset of Alzheimer's disease brains. Neuropathology and Applied Neurobiology 50 (3), e12991 (2024)
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47.
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Dreyer, A.; Masanta, W. O.; Lugert, R.; Bohne, W.; Groß, U.; Leha, A.; Dakna, M.; Lenz, C.; Zautner, A. E.: Proteome profiling of Campylobacter jejuni 81–176 at 37 °C and 42 °C by label-free mass spectrometry. BMC Microbiology 24, 191 (2024)
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48.
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Velychko, T.; Mohammad, E.; Ferrer-Vicens, I.; Parfentev, I.; Werner, M.; Studniarek, C.; Schwalb, B.; Urlaub, H.; Murphy, S.; Cramer, P. et al.; Lidschreiber, M.: CDK7 kinase activity promotes RNA polymerase II promoter escape by facilitating initiation factor release. Molecular Cell 84 (12), pp. 2287 - 2303.e10 (2024)
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49.
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Wirth, J. O.; Schentarra, E.-M.; Scheiderer, L.; Macarrón-Palacios, V.; Tarnawski, M.; Hell, S. W.: Uncovering kinesin dynamics in neurites with MINFLUX. Communications Biology 7, 661 (2024)
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50.
Journal Article
Ferreira, N.; Kulkarni, A.; Agorku, D.; Midelashvili, T.; Hardt, O.; Legler, T. J.; Ströbel, P.; Conradi, L.-C.; Alves, F.; Ramos Gomes, F. et al.; Markus, M. A.: OrganoIDNet: a deep learning tool for identification of therapeutic effects in PDAC organoid-PBMC co-cultures from time-resolved imaging data. Cellular Oncology (2024)
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