Publications of Monika Raabe

Harasimov, K.; Gorry, R. L.; Welp, L. M.; Penir, S. M.; Horokhovskyi, Y.; Cheng, S.; Takaoka, K.; Stützer, A.; Frombach, A.-S.; Taylor Tavares, A. L. et al.; Raabe, M.; Haag, S.; Saha, D.; Grewe, K.; Schipper, V.; Rizzoli, S. O.; Urlaub, H.; Liepe, J.; Schuh, M.: The maintenance of oocytes in the mammalian ovary involves extreme protein longevity. Nature Cell Biology 26, pp. 1124 - 1138 (2024)

Soh, W. T.; Roetschke, H. P.; Cormican, J. A.; Teo, B.F.; Chiam, N. C.; Raabe, M.; Pflanz, R.; Henneberg, F.; Becker, S.; Chari, A. et al.; Liu, H.; Urlaub, H.; Liepe, J.; Mishto, M.: Protein degradation by human 20S proteasomes elucidates the interplay between peptide hydrolysis and splicing. Nature Communications 15 (1), 1147 (2024)

Stützer, A.; Welp, L.; Raabe, M.; Sachsenberg, T.; Kappert, C.; Wulf, A.; Lau, A. M.; David, S.-S.; Chernev, A.; Kramer, K. et al.; Politis, A.; Kohlbacher, O.; Fischle, W.; Urlaub, H.: Analysis of protein-DNA interactions in chromatin by UV induced cross-linking and mass spectrometry. Nature Communications 11, 5250 (2020)

Martin, S.; Bellora, N.; González-Vallinas, J.; Irimia, M.; Chebli, K.; DeToledo, M.; Raabe, M.; Eyras, E.; Urlaub, H.; Blencowe, B. J. et al.; Tazi, J.: Preferential binding of a stable G3BP ribonucleoprotein complex to intron-retaining transcripts in mouse brain and modulation of their expression in the cerebellum. Journal of Neurochemistry 139 (3), pp. 349 - 368 (2016)

Koch, H.; Raabe, M.; Urlaub, H.; Bindereif, A.; Preußer, C.: The polyadenylation complex of Trypanosoma brucei: Characterization of the functional poly(A) polymerase. RNA Biology 13 (2), pp. 221 - 231 (2016)

Crisci, C.; Raleff, F.; Bagdul, I.; Raabe, M.; Urlaub, H.; Rain, J. C.; Krämer, A.: Mammalian splicing factor SF1 interacts with SURP domains of U2 snRNP-associated proteins. Nucleic Acids Research 43 (21), pp. 10456 - 10473 (2015)

Lin, T. Y.; Voronovsky, A.; Raabe, M.; Urlaub, H.; Sander, B.; Golas, M. M.: Dual tagging as an approach to isolate endogenous chromatin remodeling complexes from Saccharomyces cerevisiae. Biochimica et Biophysica Acta - Proteins and Proteomics 1854 (3), pp. 198 - 208 (2015)

Krüger, J. M.; Favaro, P. D.; Liu, M.; Kitlinska, A.; Huang, X. J.; Raabe, M.; Akad, D. S.; Liu, Y.; Urlaub, H.; Dong, Y. et al.; Xu, W.; Schlüter, O. M.: Differential roles of postsynaptic density-93 isoforms in regulating synaptic transmission. Journal of Neuroscience 33 (39), pp. 15504 - 15517 (2013)

Schmidt, C.; Hesse, D.; Raabe, M.; Urlaub, H.; Jahn, O.: An automated in-gel digestion/iTRAQ-labeling workflow for robust quantification of gel-separated proteins. Proteomics 13 (9), pp. 1417 - 1422 (2013)

Melero, R.; Buchwald, G.; Castano, R.; Raabe, M.; Gil, D.; Lazaro, M.; Urlaub, H.; Conti, E.; Llorca, O.: The cryo-EM structure of the UPF-EJC complex shows UPF1 poised toward the RNA 3 ' end. Nature Structural and Molecular Biology 19 (5), pp. 498 - 505 (2012)

Lemeer, S.; Kunold, E.; Klaeger, S.; Raabe, M.; Towers, M. W.; Claudes, E.; Arrey, T. N.; Strupat, K.; Urlaub, H.; Kuster, B.: Phosphorylation site localization in peptides by MALDI MS/MS and the Mascot Delta Score. Analytical and Bioanalytical Chemistry 402 (1), pp. 249 - 260 (2012)

Fischer, S.; Benz, J.; Spaeth, B.; Maier, L. K.; Straub, J.; Grenzow, M.; Raabe, M.; Urlaub, H.; Hoffmann, J.; Brutschy, B. et al.; Allers, T.; Soppa, J.; Marchfelder, A.: The archaeal Lsm protein binds to small RNAs. Journal of Biological Chemistry 285 (45), pp. 34429 - 34438 (2010)

Georg, J.; Schomacher, L.; Chong, J. P. J.; Majernik, A. I.; Raabe, M.; Urlaub, H.; Muller, S.; Ciirdaeva, E.; Kramer, W.; Fritz, H. J.: The Methanothermobacter thermautotrophicus ExoIII homologue Mth212 is a DNA uridine endonuclease. Nucleic Acids Research 34 (18), pp. 5325 - 5336 (2006)

Schmidt, C.; Raabe, M.; Lührmann, R.; Urlaub, H.: Analyzing the protein assembly and dynamics of the human spliceosome with SILAC. In: Stable isotope labeling by amino acids in cell culture (SILAC): Methods and protocols, pp. 227 - 244 (Ed. Warscheid, B.). Springer, New York, N.Y (2014)

Welp, L. M.; Sachsenberg, T.; Wulf, A.; Chernev, A.; Horokhovskyi, Y.; Neumann, P.; Pašen, M.; Siraj, A.; Raabe, M.; Johannsson, S. et al.; Schmitzova, J.; Netz, E.; Pfeuffer, J.; He, Y.; Fritzemeier, K.; Delanghe, B.; Viner, R.; Vos, S. M.; Cramer, P.; Ficner, R.; Liepe, J.; Kohlbacher, O.; Urlaub, H.: Chemical crosslinking extends and complements UV crosslinking in analysis of RNA/DNA nucleic acid–protein interaction sites by mass spectrometry. bioRxiv (2024)