Software

Our open-source software is available on our lab's GitHub page.

Most used software:

HH-suite for sensitive protein sequence searching using hidden Markov models

MMseqs2 ultra fast and sensitive sequence searching and clustering: https://mmseqs.com

Datenbanken fuer MMseqs2 software: https:/data.mmseqs.com

CCMpred: protein residue-residue Contacts from Correlated Mutations

WiSH: Who is the host? prediction of phage-host relationships

Webservers:

Some of our tools are available as webservice on the nice MPI Bioinformatics Toolkit of our colleagues from Tübingen.

MMseqs2 server for fast sequence similarity search: https://search.mmseqs.com/search

BaMMmotif2 webserver for motif discovery and analysis in DNA and RNA sequences: https://bammmotif.soedinglab.org

Bipartite motif finder for protein-RNA-binding (BMF): https://bmf.soedinglab.org

Data server (for HH-suite etc): Data Server