Publications

151.

Journal Article

Wohlgemuth, I.; Brenne, S.; Beringer, M.; Rodnina, M. V.: Modulation of the rate of peptidyl transfer on the ribosome by the nature of substrates. Journal of Biological Chemistry 283 (47), pp. 32229 - 32235 (2008)

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152.

Journal Article

Bruell, C. M.; Eichholz, C.; Kubarenko, A.; Post, V.; Katunin, V. I.; Hobbie, S. N.; Rodnina, M. V.; Boettger, E. C.: Conservation of bacterial protein synthesis machinery: initiation and elongation in mycobacterium smegmatis. Biochemistry 47 (34), pp. 8828 - 8839 (2008)

MPG.PuRe

153.

Journal Article

Lancaster, L. E.; Savelsbergh, A.; Kleanthous, C.; Wintermeyer, W.; Rodnina, M. V.: Colicin E3 cleavage of 16S rRNA impairs decoding and accelerates tRNA translocation on Escherichia coli ribosomes. Molecular Microbiology 69 (2), pp. 390 - 401 (2008)

MPG.PuRe

154.

Journal Article

Milon, P.; Konevega, A. L.; Gualerzi, C. O.; Rodnina, M. V.: Kinetic checkpoint at a late step in translation initiation. Molecular Cell 30 (6), pp. 712 - 720 (2008)

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155.

Journal Article

Kingery, D. A.; Pfund, E.; Voorhees, R. M.; Okuda, K.; Wohlgemuth, I.; Kitchen, D. E.; Rodnina, M. V.; Strobel, S. A.: An uncharged amine in the transition state of the ribosornal peptidyl transfer reaction. Chemistry and Biology 15 (5), pp. 493 - 500 (2008)

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156.

Journal Article

Bornemann, T.; Joeckel, J.; Rodnina, M. V.; Wintermeyer, W.: Signal sequence–independent membrane targeting of ribosomes containing short nascent peptides within the exit tunnel. Nature Structural and Molecular Biology 15, pp. 494 - 499 (2008)

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157.

Journal Article

Julian, P.; Konevega, A. L.; Scheres, S. H. W.; Lazaro, M.; Gil, D.; Wintermeyer, W.; Rodnina, M. V.; Valle, M.: Structure of ratcheted ribosomes with tRNAs in hybrid states. Proceedings of the National Academy of Sciences of the United States of America 105 (44), pp. 16924 - 16927 (2008)

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158.

Journal Article

Fischer, N.; Paleskava, A.; Gromadski, K. B.; Konevega, A. L.; Wahl, M. C.; Stark, H.; Rodnina, M. V.: Towards understanding selenocysteine incorporation into bacterial proteins. Biological Chemistry 388 (10), pp. 1061 - 1067 (2007)

MPG.PuRe

159.

Journal Article

Beringer, M.; Rodnina, M. V.: Importance of tRNA interactions with 23S rRNA for peptide bond formation on the ribosome: studies with substrate analogs. Biological Chemistry 388 (7), pp. 687 - 691 (2007)

MPG.PuRe

160.

Journal Article

Beringer, M.; Rodnina, M. V.: The ribosomal peptidyl transferase. Molecular Cell 26, pp. 311 - 321 (2007)

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161.

Journal Article

Konevega, A. L.; Fischer, N.; Semenkov, Y. P.; Stark, H.; Wintermeyer, W.; Rodnina, M. V.: Spontaneous reverse movement of mRNA-bound tRNA through the ribosome. Nature Structural Molecular Biology 14, pp. 318 - 324 (2007)

MPG.PuRe

162.

Journal Article

Schuemmer, T.; Gromadski, K. B.; Rodnina, M. V.: Mechanism of EF-Ts-catalyzed Guanine nucleotide exchange in EF-Tu: Contribution of interactions mediated by Helix B of EF-Tu. Biochemistry 46 (17), pp. 4977 - 4984 (2007)

MPG.PuRe

163.

Journal Article

Clancy, J. L.; Nousch, M.; Rodnina, M. V.; Preiss, T.: The ins and outs of translation. Genome Biology 8 (12), pp. 321.1 - 321.4 (2007)

MPG.PuRe

164.

Journal Article

Gromadski, K. B.; Schuemmer, T.; Stromgaard, A.; Knudsen, C. R.; Kinzy, T. G.; Rodnina, M. V.: Kinetics of the interactions between yeast elongation factors 1A and 1Bα, guanine nucleotides, and aminoacyl-tRNA. Journal of Biological Chemistry 282, pp. 35629 - 35637 (2007)

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165.

Journal Article

Kothe, U.; Rodnina, M. V.: Codon reading by tRNA^Ala with modified uridine in the wobble position. Molecular Cell 25 (1), pp. 167 - 174 (2007)

MPG.PuRe

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166.

Journal Article

Lancaster, L. E.; Wintermeyer, W.; Rodnina, M. V.: Colicins and their potential in cancer treatment. Blood Cells, Molecules, and Diseases 38 (1), pp. 15 - 18 (2007)

MPG.PuRe

167.

Journal Article

Milon, P.; Konevega, A. L.; Peske, F.; Fabbretti, A.; Gualerzi, C. O.; Rodnina, M. V.: Transient kinetics, fluorescence, and FRET in studies of initiation of translation in bacteria. Methods in Enzymology 430, pp. 1 - 30 (2007)

MPG.PuRe

168.

Journal Article

Rodnina, M. V.; Beringer, M.; Wintermeyer, W.: How ribosomes make peptide bonds. Trends in Biochemical Sciences 32 (1), pp. 20 - 26 (2007)

MPG.PuRe

169.

Journal Article

Samartzis, P.; Lin, J. J. M.; Ching, T. T.; Chaudhuri, C.; Lee, S. H.; Wodtke, A. M.: The simplest all-nitrogen ring: Photolytically filling the cyclic-N₃ well. Journal of Chemical Physics 126 (4), 041101 (2007)

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170.

Journal Article

Pisareva, V. P.; Pisarev, A. V.; Hellen, C. U.; Rodnina, M. V.; Pestova, T. V.: Kinetic analysis of interaction of eukaryotic release factor 3 with guanine nucleotides. Journal of Biological Chemistry 281, pp. 40224 - 40235 (2006)

MPG.PuRe

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171.

Journal Article

Kubarenko, A.; Sergiev, P.; Wintermeyer, W.; Dontsova, O. A.; Rodnina, M. V.: Involvement of helix 34 of 16 S rRNA in decoding and translocation on the ribosome. Journal of Biological Chemistry 281, pp. 35235 - 35244 (2006)

MPG.PuRe

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172.

Journal Article

Kothe, U.; Paleskava, A.; Konevega, A. L.; Rodnina, M. V.: Single-step purification of specific tRNAs by hydrophobic tagging. Analytical Biochemistry 356 (1), pp. 148 - 150 (2006)

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173.

Journal Article

Daviter, T.; Gromadski, K. B.; Rodnina, M. V.: The ribosome’s response to codon–anticodon mismatches. Biochimie 88 (8), pp. 1001 - 1011 (2006)

MPG.PuRe

174.

Journal Article

Dahl, L. D.; Wieden, H. J.; Rodnina, M. V.; Knudsen, C. R.: The importance of P-loop and domain movements in EF-Tu for guanine nucleotide exchange. Journal of Biological Chemistry 281, pp. 21139 - 21146 (2006)

MPG.PuRe

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175.

Journal Article

Gromadski, K. B.; Daviter, T.; Rodnina, M. V.: A uniform response to mismatches in codon-anticodon complexes ensures ribosomal fidelity. Molecular Cell 21, pp. 369 - 377 (2006)

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176.

Journal Article

Bieling, P.; Beringer, M.; Adio, S.; Rodnina, M. V.: Peptide bond formation does not involve acid-base catalysis by ribosomal residues. Nature Structural & Molecular Biology 13 (5), pp. 423 - 428 (2006)

MPG.PuRe

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177.

Journal Article

Ji, Y.; Bobadova-Parvanova, P.; Larson, C.; Samartzis, P. C.; Morokuma, K.; Lin, J. J. M.; Ching, T. T.; Chaudhuri, C.; Lee, S. H.; Wodtke, A. M.: The heat of formation of chlorine-isocyanate and the relative stability of isoelectronic molecules: An experimental and theoretical study. Journal of Chemical Physics 124 (24), 241106 (2006)

MPG.PuRe

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178.

Journal Article

Kothe, U.; Rodnina, M. V.: Delayed release of inorganic phosphate from elongation factor Tu following GTP hydrolysis on the ribosome. Biochemistry 45 (42), pp. 12767 - 12774 (2006)

MPG.PuRe

179.

Journal Article

Larson, C.; Ji, Y.; Samartzis, P.; Wodtke, A. M.; Lee, S. H.; Lin, J. J. M.; Chaudhuri, C.; Ching, T. T.: Collision-free photochemistry of methylazide: Observation of unimolecular decomposition of singlet methylnitrene. Journal of Chemical Physics 125 (13), 133302 (2006)

MPG.PuRe

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180.

Journal Article

Milon, P.; Tischenko, E.; Tomsic, J.; Caserta, E.; Folkers, G.; La Teana, A.; Rodnina, M. V.; Pon, C. L.; Boelens, R.; Gualerzi, C. O.: The nucleotide-binding site of bacterial translation initiation factor 2 (IF2) as a metabolic sensor. Proceedings of the National Academy of Sciences of the United States of America 103 (38), pp. 13962 - 13967 (2006)

MPG.PuRe

publisher-version

181.

Journal Article

Rodnina, M. V.; Beringer, M.; Wintermeyer, W.: Mechanism of peptide bond formation on ribosomes. Quaterly Reviews of Biophysics 39 (3), pp. 203 - 225 (2006)

MPG.PuRe

182.

Journal Article

Wilden, B.; Savelsbergh, A.; Rodnina, M. V.; Wintermeyer, W.: Role and timing of GTP binding and hydrolysis during EF-G-dependent tRNA translocation on the ribosome. Proceedings of the National Academy of Sciences of the United States of America 103 (37), pp. 13670 - 13675 (2006)

MPG.PuRe

publisher-version

183.

Journal Article

Wohlgemuth, I.; Beringer, M.; Rodnina, M. V.: Rapid peptide bond formation on isolated 50S ribosomal subunits. EMBO Reports 7 (7), pp. 699 - 703 (2006)

MPG.PuRe

184.

Journal Article

Savelsbergh, A.; Mohr, D.; Kothe, U.; Wintermeyer, W.; Rodnina, M. V.: Control of phosphate release from elongation factor G by ribosomal protein L7/12. EMBO Journal 24, pp. 4316 - 4323 (2005)

MPG.PuRe

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185.

Journal Article

Beringer, M.; Bruell, C.; Xiong, L.; Pfister, P.; Katunin, V. I.; Mankin, A.; Boettger, E. C.; Rodnina, M. V.: Essential mechanisms in the catalysis of peptide bond formation on the ribosome. Journal of Biological Chemistry 280 (43), pp. 36065 - 36072 (2005)

MPG.PuRe

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186.

Journal Article

Buskiewicz, I.; Peske, F.; Wieden, H. J.; Gryczynski, I.; Rodnina, M. V.; Wintermeyer, W.: Conformations of the signal recognition particle protein Ffh from Escherichia coli as determined by FRET. Journal of Molecular Biology 351 (2), pp. 417 - 430 (2005)

MPG.PuRe

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187.

Journal Article

Kim, M. H.; Korogod, N.; Schneggenburger, R.; Ho, W. K.; Lee, S. H.: Interplay between Na+/Ca2+ exchangers and mitochondria in Ca2+ clearance at the calyx of Held. Journal of Neuroscience 25 (26), pp. 6057 - 6065 (2005)

MPG.PuRe

188.

Journal Article

Peske, F.; Rodnina, M. V.; Wintermeyer, W.: Sequence of steps in ribosome recycling as defined by kinetic analysis. Molecular Cell 18, pp. 403 - 412 (2005)

MPG.PuRe

publisher-version

189.

Journal Article

Lindenberg, A. M.; Larsson, J.; Sokolowski-Tinten, K.; Gaffney, K. J.; Blome, C.; Synnergren, O.; Sheppard, J.; Caleman, C.; MacPhee, A. G.; Weinstein, D. et al.; Lowney, D. P.; Allison, T. K.; Matthews, T.; Falcone, R. W.; Cavalieri, A. L.; Fritz, D. M.; Lee, S. H.; Bucksbaum, P. H.; Reis, D. A.; Rudati, J.; Fuoss, P. H.; Kao, C. C.; Siddons, D. P.; Pahl, R.; Als-Nielsen, J.; Duesterer, S.; Ischebeck, R.; Schlarb, H.; Schulte-Schrepping, H.; Tschentscher, T.; Schneider, J.; von der Linde, D.; Hignette, O.; Sette, F.; Chapman, H. N.; Lee, R. W.; Hansen, T. N.; Techert, S.; Wark, J. S.; Bergh, M.; Huldt, G.; van der Spoel, D.; Timneanu, N.; Hajdu, J.; Akre, R. A.; Bong, E.; Krejcik, P.; Arthur, J.; Brennan, S.; Luening, K.; Hastings, J. B.: Atomic-scale visualization of inertial dynamics. Science 308 (5720), pp. 392 - 395 (2005)

MPG.PuRe

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190.

Journal Article

Cavalieri, A. L.; Fritz, D. M.; Lee, S. H.; Bucksbaum, P. H.; Reis, D. A.; Rudati, J.; Mills, D. M.; Fuoss, P. H.; Stephenson, G. B.; Kao, C. C. et al.; Siddons, D. P.; Lowney, D. P.; MacPhee, A. G.; Weinstein, D.; Falcone, R. W.; Pahl, R.; Als-Nielsen, J.; Blome, C.; Duesterer, S.; Ischebeck, R.; Schlarb, H.; Schulte-Schrepping, H.; Tschentscher, T.; Schneider, J.; Hignette, O.; Sette, F.; Sokolowski-Tinten, K.; Chapman, H. N.; Lee, R. W.; Hansen, T. N.; Synnergren, O.; Larsson, J.; Techert, S.; Sheppard, J.; Wark, J. S.; Bergh, M.; Caleman, C.; Huldt, G.; van der Spoel, D.; Timneanu, N.; Hajdu, J.; Akre, R. A.; Bong, E.; Emma, P.; Krejcik, P.; Arthur, J.; Brennan, S.; Gaffney, K. J.; Lindenberg, A. M.; Luening, K.; Hastings, J. B.: Clocking femtosecond x rays. Physical Review Letters 94 (11), 114801 (2005)

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191.

Journal Article

Rodnina, M. V.; Gromadski, K. B.; Kothe, U.; Wieden, H. J.: Recognition and selection of tRNA in translation. FEBS Letters 579 (4), pp. 938 - 942 (2005)

MPG.PuRe

192.

Journal Article

Kaiser, J. T.; Gromadski, K.; Rother, M.; Engelhardt, H.; Rodnina, M. V.; Wahl, M. C.: Structural and functional investigation of a putative archaeal selenocysteine synthase. Biochemistry 44, pp. 13315 - 13327 (2005)

MPG.PuRe

193.

Journal Article

Rodnina, M. V.; Beringer, M.; Bieling, M.: Ten remarks on peptide bond formation on the ribosome. Biochemical Society Transactions 33 (3), pp. 493 - 498 (2005)

MPG.PuRe

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194.

Journal Article

Peske, F.; Savelsbergh, A.; Katunin, V. I.; Rodnina, M. V.; Wintermeyer, W.: Conformational changes of the small ribosomal subunit during elongation factor G-dependent tRNA–mRNA translocation. Journal of Molecular Biology 343 (5), pp. 1183 - 1194 (2004)

MPG.PuRe

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195.

Journal Article

Buskiewicz, I.; Deuerling, E.; Gu, S. Q.; Joeckel, J.; Rodnina, M. V.; Bukau, B.; Wintermeyer, W.: Trigger factor binds to ribosome–signal-recognition particle (SRP) complexes and is excluded by binding of the SRP receptor. Proceedings of the National Academy of Sciences of the United States of America 101 (21), pp. 7902 - 7906 (2004)

MPG.PuRe

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196.

Journal Article

Sievers, A.; Beringer, M.; Rodnina, M. V.; Wolfenden, R.: The ribosome as an entropy trap. Proceedings of the National Academy of Sciences of the United States of America 101 (21), pp. 7897 - 7901 (2004)

MPG.PuRe

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197.

Journal Article

Gromadski, K. B.; Rodnina, M. V.: Streptomycin interferes with conformational coupling between codon recognition and GTPase activation on the ribosome. Nature Structural & Molecular Biology 11 (4), pp. 316 - 322 (2004)

MPG.PuRe

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198.

Journal Article

Kothe, U.; Wieden, H. J.; Mohr, D.; Rodnina, M. V.: Interaction of helix D of elongation factor Tu with helices 4 and 5 of protein L7/12 on the ribosome. Journal of Molecular Biology 336 (5), pp. 1011 - 1021 (2004)

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199.

Journal Article

Eversole-Hesslein, A.; Katunin, V. I.; Beringer, M.; Kosek, A. B.; Rodnina, M. V.; Strobel, S.: Exploration of the conserved A+C wobble pair within the ribosomal peptidyl transferase center using affinity purified mutant ribosomes. Nucleic Acids Research 32 (12), pp. 3760 - 3770 (2004)

MPG.PuRe

200.

Journal Article

Gromadski, K. B.; Rodnina, M. V.: Kinetic determinants of high-fidelity tRNA discrimination on the ribosome. Molecular Cell 13, pp. 191 - 200 (2004)

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Journal Article (261)