Publikationen

Zeitschriftenartikel (254)

1.
Zeitschriftenartikel
Komar, A.A.; Samatova, E.; Rodnina, M. V.: Translation Rates and Protein Folding. Journal of Molecular Biology 436 (14), 168384 (2024)
2.
Zeitschriftenartikel
Jäger, N.; Pöhlmann, S.; Rodnina, M. V.; Ayyub, S. A.: Interferon-Stimulated Genes that Target Retrovirus Translation. Viruses 16 (6), 933 (2024)
3.
Zeitschriftenartikel
Bandyra, K. J.; Fröhlich, K. S.; Vogel, J.; Rodnina, M. V.; Goyal, A.; Luisi, B.: Cooperation of regulatory RNA and the RNA degradosome in transcript surveillance. Nucleic Acids Research, gkae455 (2024)
4.
Zeitschriftenartikel
Senyushkina, T.; Samatova, E.; Klimova, M.; Rodnina, M. V.: Kinetics of programmed and spontaneous ribosome sliding along the mRNA. Nucleic Acids Research 52 (11), S. 6507 - 6517 (2024)
5.
Zeitschriftenartikel
Haase, N.; Holtkamp, W.; Christ, S.; Heinemann, D.; Rodnina, M. V.; Rudorf, S.: Decomposing bulk signals to reveal hidden information in processive enzyme reactions: A case study in mRNA translation. PLOS Computational Biology 20 (3), e1011918 (2024)
6.
Zeitschriftenartikel
Rodnina, M. V.: Peptidyl-tRNA hydrolase as a key player in the liberation of truncated nascent chains from the ribosomal subunit. Molecular Cell 84 (4), S. 614 - 615 (2024)
7.
Zeitschriftenartikel
Samatova, E.; Komar, A.A.; Rodnina, M. V.: How the ribosome shapes cotranslational protein folding. Current Opinion in Structural Biology 84, 102740 (2024)
8.
Zeitschriftenartikel
Jäger, N.; Ayyub, S. A.; Peske, F.; Liedtke, D.; Bohne, J.; Hoffmann, M.; Rodnina, M. V.; Pöhlmann, S.: The Inhibition of Gag-Pol Expression by the Restriction Factor Shiftless Is Dispensable for the Restriction of HIV-1 Infection. Viruses 16 (4), 583 (2024)
9.
Zeitschriftenartikel
Helm, M.; Bohnsack, M.T.; Carell, T.; Dalpke, A.; Entian, K.-D.; Ehrenhofer-Murray, A.; Ficner, R.; Hammann, C.; Höbartner, C.; Jäschke, A. et al.; Jeltsch, A.; Kaiser, S.; Klassen, R.; Leidel, S.A.; Marx, A.; Mörl, M.; Meier, J.C.; Meister, G.; Rentmeister, A.; Rodnina, M. V.; Roignant, J.-Y.; Schaffrath, R.; Stadler, P.; Stafforst, T.: Experience with German Research Consortia in the Field of Chemical Biology of Native Nucleic Acid Modifications. ACS Chemical Biology 18 (12), S. 2441 - 2449 (2023)
10.
Zeitschriftenartikel
Ayyub, S. A.: Lost and Found in Translation: Why Ribosomal Frameshifting Might Be the Next Antiviral Target. Resonance 28 (9), S. 1391 - 1400 (2023)
11.
Zeitschriftenartikel
Jain, S.; Koziej, L.; Poulis, P.; Kaczmarczyk, I.; Gaik, M.; Rawski, M.; Ranjan, N.; Glatt, S.; Rodnina, M. V.: Modulation of translational decoding by m6A modification of mRNA. Nature Communications 14, 4784 (2023)
12.
Zeitschriftenartikel
Rodnina, M. V.: Decoding and Recoding of mRNA Sequences by the Ribosome. Annual Review of Biophysics 52, S. 161 - 182 (2023)
13.
Zeitschriftenartikel
Poulis, P.; Peske, F.; Rodnina, M. V.: The many faces of ribosome translocation along the mRNA: reading frame maintenance, ribosome frameshifting and translational bypassing. Biological Chemistry 404 (8-9), S. 755 - 767 (2023)
14.
Zeitschriftenartikel
Han, W.; Peng, B.-Z.; Wang, C.; Townsend II, G. E.; Barry, N. A.; Peske, F.; Goodman, A. L.; Liu, J.; Rodnina, M. V.; Groisman, E. A.: Gut colonization by Bacteroides requires translation by an EF-G paralog lacking GTPase activity. EMBO Journal 42 (2), e112372 (2023)
15.
Zeitschriftenartikel
Mudryi, V.; Peske, F.; Rodnina, M. V.: Translation factor accelerating peptide bond formation on the ribosome: EF-P and eIF5A as entropic catalysts and a potential drug targets. BBA Advances 3, 100074 (2023)
16.
Zeitschriftenartikel
Thommen, M.; Draycheva, A.; Rodnina, M. V.: Ribosome selectivity and nascent chain context in modulating the incorporation of fluorescent non-canonical amino acid into proteins. Scientific Reports 12, 12848 (2022)
17.
Zeitschriftenartikel
Poulis, P.; Patel, A.; Rodnina, M. V.; Adio, S.: Altered tRNA dynamics during translocation on slippery mRNA as determinant of spontaneous ribosome frameshifting. Nature Communications 13, 4231 (2022)
18.
Zeitschriftenartikel
Jäger, N.; Ayyub, S. A.; Korniy, N.; Peske, F.; Hoffmann, M.; Rodnina, M. V.; Pöhlmann, S.: Mutagenic analysis of the HIV restriction factor shiftless. Viruses 14 (7), 1454 (2022)
19.
Zeitschriftenartikel
Yi, S.-H.; Petrychenko, V.; Schliep, J. E.; Goyal, A.; Linden, A.; Chari, A.; Urlaub, H.; Stark, H.; Rodnina, M. V.; Adio, S. et al.; Fischer, N.: Conformational rearrangements upon start codon recognition in human 48S translation initiation complex. Nucleic Acids Research 50 (9), S. 5282 - 5298 (2022)
20.
Zeitschriftenartikel
Mercier, E.; Wang, X.; Bögeholz, L. A. K.; Wintermeyer, W.; Rodnina, M. V.: Cotranslational biogenesis of membrane proteins in bacteria. Frontiers in Molecular Biosciences 9, 871121 (2022)
21.
Zeitschriftenartikel
Agirrezabala, X.; Samatova, E.; Macher, M.; Liutkute, M.; Maiti, M.; Gil‐Carton, D.; Novacek, J.; Valle, M.; Rodnina, M. V.: A switch from α‐helical to β‐strand conformation during co‐translational protein folding. The EMBO Journal 41 (4), e109175 (2022)
22.
Zeitschriftenartikel
Karki, P.; Carney, T. D.; Maracci, C.; Yatsenko, A. S.; Shcherbata, H. R.; Rodnina, M. V.: Tissue-specific regulation of translational readthrough tunes functions of the traffic jam transcription factor. Nucleic Acids Research 50 (11), S. 6001 - 6019 (2022)
23.
Zeitschriftenartikel
Bögeholz, L. A. K.; Mercier, E.; Wintermeyer, W.; Rodnina, M. V.: Kinetic control of nascent protein biogenesis by peptide deformylase. Scientific Reports 11, 24457 (2021)
24.
Zeitschriftenartikel
Petrychenko, V.; Peng, B. Z.; Schwarzer, A. C. d. A. P.; Peske, F.; Rodnina, M. V.; Fischer, N.: Structural mechanism of GTPase-powered ribosome-tRNA movement. Nature Communications 12 (1), 5933 (2021)
25.
Zeitschriftenartikel
Belardinelli, R.; Sharma, H.; Peske, F.; Rodnina, M. V.: Perturbation of ribosomal subunit dynamics by inhibitors of tRNA translocation. RNA 27 (9), S. 981 - 990 (2021)
26.
Zeitschriftenartikel
Absmeier, E.; Vester, K.; Ghane, T.; Burakovskiy, D. E.; Milon, P.; Imhof, P.; Rodnina, M. V.; Santos, K. F.; Wahl, M. C.: Long-range allostery mediates cooperative adenine nucleotide binding by the Ski2-like RNA helicase Brr2. Journal of Biological Chemistry 297 (1), 100829 (2021)
27.
Zeitschriftenartikel
Mercier, E.; Wang, X.; Maiti, M.; Wintermeyer, W.; Rodnina, M. V.: Lateral gate dynamics of the bacterial translocon during cotranslational membrane protein insertion. Proceedings of the National Academy of Sciences of the USA 118 (26), e2100474118 (2021)
28.
Zeitschriftenartikel
Wohlgemuth, I.; Garofalo, R.; Samatova, E. N.; Günenç, A. N.; Lenz, C.; Urlaub, H.; Rodnina, M. V.: Translation error clusters induced by aminoglycoside antibiotics. Nature Communications 12, 1830 (2021)
29.
Zeitschriftenartikel
Ranjan, N.; Pochopien, A. A.; Wu, C. C.-C.; Beckert, B.; Blanchet, S.; Green, R.; Rodnina, M. V.; Wilson, D. N.: Yeast translation elongation factor eEF3 promotes late stages of tRNA translocation. EMBO Journal 40 (6), e106449 (2021)
30.
Zeitschriftenartikel
Zhang, Y.; Laurentiis, E. D.; Bohnsack, K. E.; Wahlig, M.; Ranjan, N.; Gruseck, S.; Hackert, P.; Wölfle, T.; Rodnina, M. V.; Schwappach, B. et al.; Rospert, S.: Ribosome-bound Get4/5 facilitates the capture of tail-anchored proteins by Sgt2 in yeast. Nature Communications 12, 782 (2021)
31.
Zeitschriftenartikel
Samatova, E. N.; Daberger, J.; Liutkute, M.; Rodnina, M. V.: Translational control by ribosome pausing in bacteria: How a non-uniform pace of translation affects protein production and folding. Frontiers in Microbiology 11, 619430 (2021)
32.
Zeitschriftenartikel
Lavdovskaia, E.; Denks, K.; Nadler, F.; Steube, E.; Linden, A.; Urlaub, H.; Rodnina, M. V.; Richter-Dennerlein, R.: Dual function of GTPBP6 in biogenesis and recycling of human mitochondrial ribosomes. Nucleic Acids Research 48 (22), S. 12929 - 12942 (2020)
33.
Zeitschriftenartikel
Liutkute, M.; Maiti, M.; Samatova, E. N.; Enderlein, J.; Rodnina, M. V.: Gradual compaction of nascent peptide during cotranslational folding on the ribosome. eLife 9, e60895 (2020)
34.
Zeitschriftenartikel
Chan, K.-H.; Petrychenko, V.; Mueller, C.; Maracci, C.; Holtkamp, W.; Wilson, D. N.; Fischer, N.; Rodnina, M. V.: Mechanism of ribosome rescue by alternative ribosome-rescue factor B. Nature Communications 11, 4106 (2020)
35.
Zeitschriftenartikel
Mercier, E.; Wintermeyer, W.; Rodnina, M. V.: Co‐translational insertion and topogenesis of bacterial membrane proteins monitored in real time. EMBO Journal 39 (15), e104054 (2020)
36.
Zeitschriftenartikel
O'Loughlin, S.; Capece, M. C.; Klimova, M.; Wills, N. M.; Coakley, A.; Samatova, E. N.; O'Connor, P.k. B. F.; Loughran, G.; Weissman, J. S.; Baranov, P. V. et al.; Rodnina, M. V.; Puglisi, J.h. D.; Atkins, J. F.: Polysomes bypass a 50-nucleotide coding gap less efficiently than monosomes due to attenuation of a 5′ mRNA stem–loop and enhanced drop-off. Journal of Molecular Biology 432 (16), S. 4369 - 4387 (2020)
37.
Zeitschriftenartikel
Rodnina, M. V.; Korniy, N.; Klimova, M.; Karki, P.; Peng, B. Z.; Senyushkina, T.; Belardinelli, R.; Maracci, C.; Wohlgemuth, I.; Samatova, E. N. et al.; Peske, F.: Translational recoding: Canonical translation mechanisms reinterpreted. Nucleic Acids Research 48 (3), S. 1056 - 1067 (2020)
38.
Zeitschriftenartikel
Liutkute, M.; Samatova, E. N.; Rodnina, M. V.: Cotranslational folding of proteins on the ribosome. Biomolecules 10 (1), 97 (2020)
39.
Zeitschriftenartikel
Peng, B. Z.; Bock, L. V.; Belardinelli, R.; Peske, F.; Grubmüller, H.; Rodnina, M. V.: Active role of elongation factor G in maintaining the mRNA reading frame during translation. Science Advances 5 (12), eaax8030 (2019)
40.
Zeitschriftenartikel
Rodnina, M. V.; Peske, F.; Peng, B. Z.; Belardinelli, R.; Wintermeyer, W.: Converting GTP hydrolysis into motion: Versatile translational elongation factor G. Biological Chemistry 401 (1), S. 131 - 142 (2019)
41.
Zeitschriftenartikel
Bock, L. V.; Caliskan, N.; Korniy, N.; Peske, F.; Rodnina, M. V.; Grubmüller, H.: Thermodynamic control of −1 programmed ribosomal frameshifting. Nature Communications 10, 4598 (2019)
42.
Zeitschriftenartikel
Korniy, N.; Samatova, E. N.; Anokhina, M. M.; Peske, F.; Rodnina, M. V.: Mechanisms and biomedical implications of –1 programmed ribosome frameshifting on viral and bacterial mRNAs. FEBS Letters 593 (13), S. 1468 - 1482 (2019)
43.
Zeitschriftenartikel
Ranjan, N.; Leidel, S. A.: The epitranscriptome in translation regulation: mRNA and tRNA modifications as the two sides of the same coin? FEBS Letters 593 (13), S. 1483 - 1493 (2019)
44.
Zeitschriftenartikel
Klimova, M.; Senyushkina, T.; Samatova, E. N.; Peng, B. Z.; Pearson, M.; Peske, F.; Rodnina, M. V.: EF-G-induced ribosome sliding along the noncoding mRNA. Science Advances 5 (6), eaaw9049 (2019)
45.
Zeitschriftenartikel
Korniy, N.; Goyal, A.; Hoffmann, M.; Samatova, E. N.; Peske, F.; Pöhlmann, S.; Rodnina, M. V.: Modulation of HIV-1 Gag/Gag-Pol frameshifting by tRNA abundance. Nucleic Acids Research 47 (10), S. 5210 - 5222 (2019)
46.
Zeitschriftenartikel
Beissel , C.; Neumann, B.; Uhse, S.; Hampe , I.; Karki, P.; Krebber, H.: Translation termination depends on the sequential ribosomal entry of eRF1 and eRF3. Nucleic Acids Research 47 (9), S. 4798 - 4813 (2019)
47.
Zeitschriftenartikel
Garofalo, R.; Wohlgemuth, I.; Pearson, M.; Lenz, C.; Urlaub, H.; Rodnina, M. V.: Broad range of missense error frequencies in cellular proteins. Nucleic Acids Research 47 (6), S. 2932 - 2945 (2019)
48.
Zeitschriftenartikel
Girodat, D.; Mercier, E.; Gzyl, K. E.; Wieden, H. J.: Elongation factor Tu's nucleotide binding is governed by a thermodynamic landscape unique among bacterial translation factors. Journal of the American Chemical Society 141 (26), S. 10236 - 10246 (2019)
49.
Zeitschriftenartikel
Haase, N.; Holtkamp, W.; Lipowsky, R.; Rodnina, M. V.; Rudorf, S.: Decomposition of time-dependent fluorescence signals reveals codon-specific kinetics of protein synthesis. Nucleic Acids Research 46 (22), e130 (2018)
50.
Zeitschriftenartikel
Matsumoto, S.; Calsikan, N.; Rodnina, M. V.; Murata, A.; Nakatani, K.: Small synthetic molecule-stabilized RNA pseudoknot as an activator for -1 ribosomal frameshifting. Nucleic Acids Research 46 (16), S. 8079 - 8089 (2018)
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