Publications

Journal Article (252)

1.
Journal Article
Haase, N.; Holtkamp, W.; Christ, S.; Heinemann, D.; Rodnina, M. V.; Rudorf, S.: Decomposing bulk signals to reveal hidden information in processive enzyme reactions: A case study in mRNA translation. PLOS Computational Biology 20 (3), e1011918 (2024)
2.
Journal Article
Samatova, E.; Komar, A.A.; Rodnina, M. V.: How the ribosome shapes cotranslational protein folding. Current Opinion in Structural Biology 84, 102740 (2024)
3.
Journal Article
Liu, Z.; Xiao, C.; Lin, S.; Tittmann, K.; Dai, S.: Multifaceted Role of the Substrate Phosphate Group in Transketolase Catalysis. ACS Catalysis 14 (1), pp. 355 - 365 (2024)
4.
Journal Article
Helm, M.; Bohnsack, M.T.; Carell, T.; Dalpke, A.; Entian, K.-D.; Ehrenhofer-Murray, A.; Ficner, R.; Hammann, C.; Höbartner, C.; Jäschke, A. et al.; Jeltsch, A.; Kaiser, S.; Klassen, R.; Leidel, S.A.; Marx, A.; Mörl, M.; Meier, J.C.; Meister, G.; Rentmeister, A.; Rodnina, M. V.; Roignant, J.-Y.; Schaffrath, R.; Stadler, P.; Stafforst, T.: Experience with German Research Consortia in the Field of Chemical Biology of Native Nucleic Acid Modifications. ACS Chemical Biology 18 (12), pp. 2441 - 2449 (2023)
5.
Journal Article
Komar, A.A.; Samatova, E.; Rodnina, M. V.: Translation Rates and Protein Folding. Journal of Molecular Biology (2023)
6.
Journal Article
Uranga, J.; Rabe von Pappenheim, F.; Tittmann, K.; Mata, R. A.: Dynamic Protonation States Underlie Carbene Formation in ThDP-Dependent Enzymes: A Theoretical Study. The Journal of Physical Chemistry B 127, pp. 9423 - 9432 (2023)
7.
Journal Article
Ayyub, S. A.: Lost and Found in Translation: Why Ribosomal Frameshifting Might Be the Next Antiviral Target. Resonance 28 (9), pp. 1391 - 1400 (2023)
8.
Journal Article
Arend, M.; Ütkür, K.; Hawer, H.; Mayer, K.; Ranjan, N.; Adrian, L.; Brinkmann, U.; Schaffrath, R.: Yeast gene KTI13 (alias DPH8) operates in the initiation step of diphthamide synthesis on elongation factor 2. Microbial Cell 10 (9), pp. 195 - 203 (2023)
9.
Journal Article
Jain, S.; Koziej, L.; Poulis, P.; Kaczmarczyk, I.; Gaik, M.; Rawski, M.; Ranjan, N.; Glatt, S.; Rodnina, M. V.: Modulation of translational decoding by m6A modification of mRNA. Nature Communications 14, 4784 (2023)
10.
Journal Article
Rodnina, M. V.: Decoding and Recoding of mRNA Sequences by the Ribosome. Annual Review of Biophysics 52, pp. 161 - 182 (2023)
11.
Journal Article
Poulis, P.; Peske, F.; Rodnina, M. V.: The many faces of ribosome translocation along the mRNA: reading frame maintenance, ribosome frameshifting and translational bypassing. Biological Chemistry 404 (8-9), pp. 755 - 767 (2023)
12.
Journal Article
Han, W.; Peng, B.-Z.; Wang, C.; Townsend II, G. E.; Barry, N. A.; Peske, F.; Goodman, A. L.; Liu, J.; Rodnina, M. V.; Groisman, E. A.: Gut colonization by Bacteroides requires translation by an EF-G paralog lacking GTPase activity. EMBO Journal 42 (2), e112372 (2023)
13.
Journal Article
Mudryi, V.; Peske, F.; Rodnina, M. V.: Translation factor accelerating peptide bond formation on the ribosome: EF-P and eIF5A as entropic catalysts and a potential drug targets. BBA Advances 3, 100074 (2023)
14.
Journal Article
Thommen, M.; Draycheva, A.; Rodnina, M. V.: Ribosome selectivity and nascent chain context in modulating the incorporation of fluorescent non-canonical amino acid into proteins. Scientific Reports 12, 12848 (2022)
15.
Journal Article
Poulis, P.; Patel, A.; Rodnina, M. V.; Adio, S.: Altered tRNA dynamics during translocation on slippery mRNA as determinant of spontaneous ribosome frameshifting. Nature Communications 13, 4231 (2022)
16.
Journal Article
Jäger, N.; Ayyub, S. A.; Korniy, N.; Peske, F.; Hoffmann, M.; Rodnina, M. V.; Pöhlmann, S.: Mutagenic analysis of the HIV restriction factor shiftless. Viruses 14 (7), 1454 (2022)
17.
Journal Article
Yi, S.-H.; Petrychenko, V.; Schliep, J. E.; Goyal, A.; Linden, A.; Chari, A.; Urlaub, H.; Stark, H.; Rodnina, M. V.; Adio, S. et al.; Fischer, N.: Conformational rearrangements upon start codon recognition in human 48S translation initiation complex. Nucleic Acids Research 50 (9), pp. 5282 - 5298 (2022)
18.
Journal Article
Mercier, E.; Wang, X.; Bögeholz, L. A. K.; Wintermeyer, W.; Rodnina, M. V.: Cotranslational biogenesis of membrane proteins in bacteria. Frontiers in Molecular Biosciences 9, 871121 (2022)
19.
Journal Article
Agirrezabala, X.; Samatova, E.; Macher, M.; Liutkute, M.; Maiti, M.; Gil‐Carton, D.; Novacek, J.; Valle, M.; Rodnina, M. V.: A switch from α‐helical to β‐strand conformation during co‐translational protein folding. The EMBO Journal 41 (4), e109175 (2022)
20.
Journal Article
Karki, P.; Carney, T. D.; Maracci, C.; Yatsenko, A. S.; Shcherbata, H. R.; Rodnina, M. V.: Tissue-specific regulation of translational readthrough tunes functions of the traffic jam transcription factor. Nucleic Acids Research 50 (11), pp. 6001 - 6019 (2022)
21.
Journal Article
Bögeholz, L. A. K.; Mercier, E.; Wintermeyer, W.; Rodnina, M. V.: Kinetic control of nascent protein biogenesis by peptide deformylase. Scientific Reports 11, 24457 (2021)
22.
Journal Article
Petrychenko, V.; Peng, B. Z.; Schwarzer, A. C. d. A. P.; Peske, F.; Rodnina, M. V.; Fischer, N.: Structural mechanism of GTPase-powered ribosome-tRNA movement. Nature Communications 12 (1), 5933 (2021)
23.
Journal Article
Belardinelli, R.; Sharma, H.; Peske, F.; Rodnina, M. V.: Perturbation of ribosomal subunit dynamics by inhibitors of tRNA translocation. RNA 27 (9), pp. 981 - 990 (2021)
24.
Journal Article
Absmeier, E.; Vester, K.; Ghane, T.; Burakovskiy, D. E.; Milon, P.; Imhof, P.; Rodnina, M. V.; Santos, K. F.; Wahl, M. C.: Long-range allostery mediates cooperative adenine nucleotide binding by the Ski2-like RNA helicase Brr2. Journal of Biological Chemistry 297 (1), 100829 (2021)
25.
Journal Article
Mercier, E.; Wang, X.; Maiti, M.; Wintermeyer, W.; Rodnina, M. V.: Lateral gate dynamics of the bacterial translocon during cotranslational membrane protein insertion. Proceedings of the National Academy of Sciences of the USA 118 (26), e2100474118 (2021)
26.
Journal Article
Wohlgemuth, I.; Garofalo, R.; Samatova, E. N.; Günenç, A. N.; Lenz, C.; Urlaub, H.; Rodnina, M. V.: Translation error clusters induced by aminoglycoside antibiotics. Nature Communications 12, 1830 (2021)
27.
Journal Article
Ranjan, N.; Pochopien, A. A.; Wu, C. C.-C.; Beckert, B.; Blanchet, S.; Green, R.; Rodnina, M. V.; Wilson, D. N.: Yeast translation elongation factor eEF3 promotes late stages of tRNA translocation. EMBO Journal 40 (6), e106449 (2021)
28.
Journal Article
Zhang, Y.; Laurentiis, E. D.; Bohnsack, K. E.; Wahlig, M.; Ranjan, N.; Gruseck, S.; Hackert, P.; Wölfle, T.; Rodnina, M. V.; Schwappach, B. et al.; Rospert, S.: Ribosome-bound Get4/5 facilitates the capture of tail-anchored proteins by Sgt2 in yeast. Nature Communications 12, 782 (2021)
29.
Journal Article
Samatova, E. N.; Daberger, J.; Liutkute, M.; Rodnina, M. V.: Translational control by ribosome pausing in bacteria: How a non-uniform pace of translation affects protein production and folding. Frontiers in Microbiology 11, 619430 (2021)
30.
Journal Article
Lavdovskaia, E.; Denks, K.; Nadler, F.; Steube, E.; Linden, A.; Urlaub, H.; Rodnina, M. V.; Richter-Dennerlein, R.: Dual function of GTPBP6 in biogenesis and recycling of human mitochondrial ribosomes. Nucleic Acids Research 48 (22), pp. 12929 - 12942 (2020)
31.
Journal Article
Liutkute, M.; Maiti, M.; Samatova, E. N.; Enderlein, J.; Rodnina, M. V.: Gradual compaction of nascent peptide during cotranslational folding on the ribosome. eLife 9, e60895 (2020)
32.
Journal Article
Chan, K.-H.; Petrychenko, V.; Mueller, C.; Maracci, C.; Holtkamp, W.; Wilson, D. N.; Fischer, N.; Rodnina, M. V.: Mechanism of ribosome rescue by alternative ribosome-rescue factor B. Nature Communications 11, 4106 (2020)
33.
Journal Article
Mercier, E.; Wintermeyer, W.; Rodnina, M. V.: Co‐translational insertion and topogenesis of bacterial membrane proteins monitored in real time. EMBO Journal 39 (15), e104054 (2020)
34.
Journal Article
O'Loughlin, S.; Capece, M. C.; Klimova, M.; Wills, N. M.; Coakley, A.; Samatova, E. N.; O'Connor, P.k. B. F.; Loughran, G.; Weissman, J. S.; Baranov, P. V. et al.; Rodnina, M. V.; Puglisi, J.h. D.; Atkins, J. F.: Polysomes bypass a 50-nucleotide coding gap less efficiently than monosomes due to attenuation of a 5′ mRNA stem–loop and enhanced drop-off. Journal of Molecular Biology 432 (16), pp. 4369 - 4387 (2020)
35.
Journal Article
Rodnina, M. V.; Korniy, N.; Klimova, M.; Karki, P.; Peng, B. Z.; Senyushkina, T.; Belardinelli, R.; Maracci, C.; Wohlgemuth, I.; Samatova, E. N. et al.; Peske, F.: Translational recoding: Canonical translation mechanisms reinterpreted. Nucleic Acids Research 48 (3), pp. 1056 - 1067 (2020)
36.
Journal Article
Liutkute, M.; Samatova, E. N.; Rodnina, M. V.: Cotranslational folding of proteins on the ribosome. Biomolecules 10 (1), 97 (2020)
37.
Journal Article
Peng, B. Z.; Bock, L. V.; Belardinelli, R.; Peske, F.; Grubmüller, H.; Rodnina, M. V.: Active role of elongation factor G in maintaining the mRNA reading frame during translation. Science Advances 5 (12), eaax8030 (2019)
38.
Journal Article
Rodnina, M. V.; Peske, F.; Peng, B. Z.; Belardinelli, R.; Wintermeyer, W.: Converting GTP hydrolysis into motion: Versatile translational elongation factor G. Biological Chemistry 401 (1), pp. 131 - 142 (2019)
39.
Journal Article
Bock, L. V.; Caliskan, N.; Korniy, N.; Peske, F.; Rodnina, M. V.; Grubmüller, H.: Thermodynamic control of −1 programmed ribosomal frameshifting. Nature Communications 10, 4598 (2019)
40.
Journal Article
Korniy, N.; Samatova, E. N.; Anokhina, M. M.; Peske, F.; Rodnina, M. V.: Mechanisms and biomedical implications of –1 programmed ribosome frameshifting on viral and bacterial mRNAs. FEBS Letters 593 (13), pp. 1468 - 1482 (2019)
41.
Journal Article
Ranjan, N.; Leidel, S. A.: The epitranscriptome in translation regulation: mRNA and tRNA modifications as the two sides of the same coin? FEBS Letters 593 (13), pp. 1483 - 1493 (2019)
42.
Journal Article
Klimova, M.; Senyushkina, T.; Samatova, E. N.; Peng, B. Z.; Pearson, M.; Peske, F.; Rodnina, M. V.: EF-G-induced ribosome sliding along the noncoding mRNA. Science Advances 5 (6), eaaw9049 (2019)
43.
Journal Article
Korniy, N.; Goyal, A.; Hoffmann, M.; Samatova, E. N.; Peske, F.; Pöhlmann, S.; Rodnina, M. V.: Modulation of HIV-1 Gag/Gag-Pol frameshifting by tRNA abundance. Nucleic Acids Research 47 (10), pp. 5210 - 5222 (2019)
44.
Journal Article
Beissel , C.; Neumann, B.; Uhse, S.; Hampe , I.; Karki, P.; Krebber, H.: Translation termination depends on the sequential ribosomal entry of eRF1 and eRF3. Nucleic Acids Research 47 (9), pp. 4798 - 4813 (2019)
45.
Journal Article
Garofalo, R.; Wohlgemuth, I.; Pearson, M.; Lenz, C.; Urlaub, H.; Rodnina, M. V.: Broad range of missense error frequencies in cellular proteins. Nucleic Acids Research 47 (6), pp. 2932 - 2945 (2019)
46.
Journal Article
Girodat, D.; Mercier, E.; Gzyl, K. E.; Wieden, H. J.: Elongation factor Tu's nucleotide binding is governed by a thermodynamic landscape unique among bacterial translation factors. Journal of the American Chemical Society 141 (26), pp. 10236 - 10246 (2019)
47.
Journal Article
Haase, N.; Holtkamp, W.; Lipowsky, R.; Rodnina, M. V.; Rudorf, S.: Decomposition of time-dependent fluorescence signals reveals codon-specific kinetics of protein synthesis. Nucleic Acids Research 46 (22), e130 (2018)
48.
Journal Article
Matsumoto, S.; Calsikan, N.; Rodnina, M. V.; Murata, A.; Nakatani, K.: Small synthetic molecule-stabilized RNA pseudoknot as an activator for -1 ribosomal frameshifting. Nucleic Acids Research 46 (16), pp. 8079 - 8089 (2018)
49.
Journal Article
Zinoviev, A.; Goyal, A.; Jindal, S.; LaCava, J.; Komar, A. A.; Rodnina, M. V.; Hellen, C. U. T.; Pestova, T. V.: Functions of unconventional mammalian translational GTPases GTPBP1 and GTPBP2. Genes and Development 32 (17-18), pp. 1226 - 1241 (2018)
50.
Journal Article
Graf, M.; Huter, P.; Maracci, C.; Peterek, M.; Rodnina, M. V.; Wilson, D. N.: Visualization of translation termination intermediates trapped by the Apidaecin 137 peptide during RF3-mediated recycling of RF1. Nature Communications 9, 3053 (2018)
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