Publikationen
Zeitschriftenartikel (120)
1.
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22, 32 (2024)
Exosomes in skin photoaging: biological functions and therapeutic opportunity. Cell Communication and Signaling 2.
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52 (D1), S. D426 - D433 (2024)
DescribePROT in 2023: more, higher-quality and experimental annotations and improved data download options. Nucleic Acids Research 3.
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Interfacial residues in protein–protein complexes are in the eyes of the beholder. Proteins: Structure, Function, and Bioinformatics (2023)
4.
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5 (2), lqad057 (2023)
Cooperativity boosts affinity and specificity of proteins with multiple RNA-binding domains. NAR: genomics and bioinformatics 5.
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Fast and accurate protein structure search with Foldseek. Nature Biotechnology (2023)
6.
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78 (5), S. 1148 - 1168 (2023)
Protease allergens as initiators–regulators of allergic inflammation. Allergy: European Journal of Allergy and Clinical Immunology 7.
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5 (1), lqad007 (2023)
RNA sequencing indicates widespread conservation of circadian clocks in marine zooplankton. NAR: genomics and bioinformatics 8.
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19 (6), S. 679 - 682 (2022)
ColabFold: making protein folding accessible to all. Nature Methods 9.
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8 (15), eabj8633 (2022)
Cln5 represents a new type of cysteine-basedS-depalmitoylase linked to neurodegeneration. Science Advances 10.
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18 (2), e9816 (2022)
Large-scale analysis of Drosophila core promoter function using synthetic promoters. Molecular Systems Biology 11.
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37 (19), S. 3364 - 3366 (2021)
SpacePHARER: sensitive identification of phages from CRISPR spacers in prokaryotic hosts. Bioinformatics 12.
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37 (18), S. 3029 - 3031 (2021)
Fast and sensitive taxonomic assignment to metagenomic contigs. Bioinformatics 13.
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37, S. i308 - i316 (2021)
Thermodynamic modeling reveals widespread multivalent binding by RNA-binding proteins. Bioinformatics 14.
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37 (Suppl. 1), S. i308 - i316 (2021)
Thermodynamic modeling reveals widespread multivalent binding by RNA-binding proteins. Bioinformatics 15.
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368 (12), fnab067 (2021)
Going to extremes: A metagenomic journey into the dark matter of life. FEMS Microbiology Letters 16.
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22, 142 (2021)
Tejaas: reverse regression increases power for detecting trans-eQTLs. Genome Biology 17.
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3 (2), lquab026 (2021)
Bayesian Markov models improve the prediction of binding motifs beyond first order. NAR: Genomics and Bioinformatics 18.
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10, e65381 (2021)
Evidence for additive and synergistic action of mammalian enhancers during cell fate determination. eLife 19.
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49 (D1), S. D298 - D308 (2021)
DescribePROT: database of amino acid-level protein structure and function predictions. Nucleic Acids Research 20.
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72 (1), e108 (2020)
Protein sequence analysis using the MPI Bioinformatics Toolkit. Current Protocols in Bioinformatics 21.
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79 (6), S. 1066 (2020)
A high-throughput screen for transcription activation domains reveals their sequence features and permits prediction by deep learning (Correction). Molecular Cell 22.
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78 (5), S. 890 - 902.e6 (2020)
A high-throughput screen for transcription activation domains reveals their sequence features and permits prediction by deep learning. Molecular Cell 23.
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8, 48 (2020)
MetaEuk—sensitive, high-throughput gene discovery, and annotation for large-scale eukaryotic metagenomics. Microbiome 24.
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30 (1), S. 4 - 14 (2020)
Mechanisms for active regulation of biomolecular condensates. Trends in Cell Biology 25.
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47 (17), S. 8961 - 8974 (2019)
Reconstructing complex lineage trees from scRNA-seq data using MERLoT. Nucleic Acids Research 26.
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35 (18), S. 3517 - 3519 (2019)
PROSSTT: Probabilistic simulation of single-cell RNA-seq data for complex differentiation processes. Bioinformatics 27.
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20 (1), 473 (2019)
HH-suite3 for fast remote homology detection and deep protein annotation. BMC Bioinformatics 28.
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35 (16), S. 2856 - 2858 (2019)
MMseqs2 desktop and local web server app for fast, interactive sequence searches. Bioinformatics 29.
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10 (1), 2909 (2019)
Lysine/RNA-interactions drive and regulate biomolecular condensation. Nature Communications 30.
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16, S. 603 - 606 (2019)
Protein-level assembly increases protein sequence recovery from metagenomic samples manyfold. Nature Methods 31.
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8, e47040 (2019)
Transcriptome maps of general eukaryotic RNA degradation factors. eLife 32.
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14 (12), e1007856 (2018)
Bayesian multiple logistic regression for case-control GWAS. PLoS Genetics 33.
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14 (11), e1006526 (2018)
Synthetic protein alignments by CCMgen quantify noise in residue-residue contact prediction. PLoS Computational Biology 34.
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430 (15), S. 2237 - 2243 (2018)
A completely reimplemented MPI Bioinformatics Toolkit with a new HHpred server at its core. Journal of Molecular Biology 35.
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8, 9938 (2018)
An analysis and evaluation of the WeFold collaborative for protein structure prediction and its pipelines in CASP11 and CASP12. Scientific Reports 36.
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46 (W1), S. W215 - W220 (2018)
The BaMM web server for de-novo motif discovery and regulatory sequence analysis. Nucleic Acids Research 37.
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9, 2542 (2018)
Clustering huge protein sequence sets in linear time. Nature Communications 38.
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35 (11), S. 1026 - 1028 (2017)
MMseqs2 enables sensitive protein sequence searching for the analysis of massive data sets. Nature Biotechnology 39.
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33 (19), S. 3113 - 3114 (2017)
WIsH: Who is the host? Predicting prokaryotic hosts from metagenomic phage contigs. Bioinformatics 40.
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6, e25637 (2017)
RNA-dependent chromatin association of transcription elongation factors and Pol II CTD kinases. eLife 41.
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66 (1), S. 38 - 49 (2017)
Genome-wide analysis of RNA polymerase II termination at protein-coding genes. Molecular Cell 42.
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355 (6322), S. 248 - 249 (2017)
Big-data approaches to protein structure prediction. Science 43.
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45 (D1), S. D170 - D176 (2017)
Uniclust databases of clustered and deeply annotated protein sequences and alignments. Nucleic Acids Research 44.
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44 (13), S. 6055 - 6069 (2016)
Bayesian Markov models consistently outperform PWMs at predicting motifs in nucleotide sequences. Nucleic Acids Research 45.
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44 (W1), S. W410 - W415 (2016)
The MPI bioinformatics Toolkit as an integrative platform for advanced protein sequence and structure analysis. Nucleic Acids Research 46.
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32 (9), S. 1323 - 1330 (2016)
MMseqs software suite for fast and deep clustering and searching of large protein sequence sets. Bioinformatics 47.
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61 (2), S. 247 - 259 (2016)
Modulations of DNA contacts by linker histones and post-translational modifications determine the mobility and modifiability of nucleosomal H3 tails. Molecular Cell 48.
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4, e09410 (2015)
A vocabulary of ancient peptides at the origin of folded proteins. eLife 49.
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11 (10), e1004343 (2015)
Automatic prediction of protein 3D Structures by probabilistic multi-template homology modeling. PLoS Computational Biology 50.
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83 (10), S. 1849 - 1858 (2015)
Structure of Ctk3, a subunit of the RNA polymerase II CTD kinase complex, reveals a non-canonical CTD-interacting domain fold. Proteins: Structure, Function, and Bioinformatics