Coles, M.; Djuranovic, S.; Söding, J.; Frickey, T.; Koretke, K.; Truffault, V.; Martin, J.; Lupas, A. N.: AbrB-like transcription factors assume a swapped hairpin fold that is evolutionarily related to double-psi beta barrels. Structure 13 (6), S. 919 - 928 (2005)

Gruber, M.; Söding, J.; Lupas, A. N.: REPPER-repeats and their periodicities in fibrous proteins. Nucleic Acids Research (London) 33, S. W239 - W243 (2005)

Moussian, B.; Söding, J.; Schwarz, H.; Nüsslein-Volhard, C.: Retroactive, a membrane-anchored extracellular protein related to vertebrate snake neurotoxin-like proteins, is required for cuticle organization in the larva of Drosophila melanogaster. Developmental Dynamics 233 (3), S. 1056 - 1063 (2005)

Söding, J.: Protein homology detection by HMM-HMM comparison. Bioinformatics 21 (7), S. 951 - 960 (2005)

Söding, J.; Biegert, A.; Lupas, A. N.: The HHpred interactive server for protein homology detection and structure prediction. Nucleic Acids Research (London) 33, S. W244 - W248 (2005)

Söding, J.; Lupas, A. N.: More than the sum of their parts: on the evolution of proteins from peptides. Bioessays 25 (9), S. 837 - 846 (2003)

Söding, J.; Graf-Meissner, A.: Study trip to Switzerland of APV-Aktivitas Darmstad.t. WOCHENBLATT FUR PAPIERFABRIKATION 128 (6), S. 374 - 375 (2000)

Söding, J.; Guery-Odelin, D.; Desbiolles, P.; Chevy, F.; Inamori, H.; Dalibard, J.: Three-body decay of a rubidium Bose-Einstein condensate. Applied Physics B-Photophysics and Laser Chemistry 69 (4), S. 257 - 261 (1999)

Guery-Odelin, D.; Söding, J.; Desbiolles, P.; Dalibard, J.: Is Bose-Einstein condensation of atomic cesium possible? Europhysics Letters 44 (1), S. 25 - 30 (1998)

Guery-Odelin, D.; Soding, J.; Desbiolles, P.; Dalibard, J.: Strong evaporative cooling of a trapped cesium gas. Optics Express 2 (8), S. 323 - 329 (1998)

Söding, J.; Guery-Odelin, D.; Desbiolles, P.; Ferrari, G.; Dalibard, J.: Giant spin relaxation of an ultracold cesium gas. Physical Review Letters 80 (9), S. 1869 - 1872 (1998)

Söding, J.; Grimm, R.; Ovchinnikov, Y. B.; Bouyer, P.; Salomon, C.: Short-distance atomic beam deceleration with a stimulated light force. Physical Review Letters 78 (8), S. 1420 - 1423 (1997)

Grimm, R.; Söding, J.; Ovchinnikov, Y. B.: Trapping atoms by rectified forces in bichromatic optical superlattices. JETP Letters 61 (5), S. 367 - 372 (1995)

Ovchinnikov, Y. B.; Söding, J.; Grimm, R.: Cooling atoms in dark gravitational laser traps. JETP Letters 61 (1), S. 21 - 26 (1995)

Söding, J.; Grimm, R.; Ovchinikov, Y. B.: Gravitational laser trap for atoms with evanescent-wave cooling. Optics Communications 119 (5-6), S. 652 - 662 (1995)

Grimm, R.; Söding, J.; Ovchinnikov, Y. B.: Coherent beam splitter for atoms based on a bichromatic standing light wave. Optics Letters 19 (9), S. 658 - 660 (1994)

Ovchinnikov, Y. B.; Söding, J.; Grimm, R.: A magnetooptical biprism for an atomic interferometer. Laser Physics 4 (5), S. 1011 - 1016 (1994)

Söding, J.; Grimm, R.: Stimulated magneto-optical force in the dressed-atom picture. Physical Review A 50 (3), S. 2517 - 2527 (1994)

Grimm, R.; Söding, J.; Ovchinnikov, Y. B.; Sidorov, A. I.: Sub-Doppler manifestation of the magneto-optical radiation force. Optics Communications 98 (1-3), S. 54 - 60 (1993)

Ovchinnikov, Y. B.; Grimm, R.; Söding, J.: Magnetooptic biprism for atomic interferometry. JETP Letters 58 (5), S. 328 - 332 (1993)

Söding, J.; Grimm, R.; Kowalski, J.; Ovchinnikov, Y. B.; Sidorov, A. I.: Observation of the magneto-optical radiation force by laser spectroscopy. Europhysics Letters 20 (2), S. 101 - 106 (1992)

Oberbeckmann, E.; Wolff, M. R.; Krietenstein, N.; Heron, M.; Schmid, A.; Straub, T.; Gerland, U.; Korber, P.: ORE-Seq: Genome-Wide Absolute Occupancy Measurement by Restriction Enzyme Accessibilities. In: Chromatin Accessibility: Methods and Protocols, S. 121 - 152 (Hg. Marinov, G. K.; Greenleaf, W. J.). Humana, New York, NY (2023)

Wojciechowska, A. W.; Wojciechowski, J. W.; Zielinska, K.; Söding, J.; Kosciolek, T.; Kotulska, M.: Aggregating gut: on the link between neurodegeneration and bacterial functional amyloids. bioRxiv (2025)

Arangasamy, Y.; Morice, É.; Jochheim, A.; Lieser, B.; Söding, J.: Evaluation of Metagenome Binning: Advances and Challenges. bioRxiv (2025)

Callegher, G.; Kneib, T.; Söding, J.; Wiemann, P.: Stochastic Variational Inference for Structured Additive Distributional Regression. arXiv (2024)

Su, H.; Zhang, R.; Söding, J.: UniOP: a universal operon prediction for high-throughput prokaryotic (meta-)genomic data using intergenic distance. bioRxiv (2024)

Zhang, R.; Mirdita, M.; Söding, J.: De novo discovery of conserved gene clusters in microbial genomes with Spacedust. bioRxiv (2024)

Kraft, L.; Söding, J.; Steinegger, M.; Jochheim, A.; Sackett, P. W.; Fernandez-Guerra, A.; Renaud, G.: CarpeDeam: A De Novo Metagenome Assembler for Heavily Damaged Ancient Datasets. bioRxiv (2024)