Publications

Scodellaro, R.; Zschüntzsch, J.; Hell, A.-K.; Alves, F.: A first explainable-AI-based workflow integrating forward-forward and backpropagation-trained networks of label-free multiphoton microscopy images to assess human biopsies of rare neuromuscular disease. Computer Methods and Programs in Biomedicine 265, 108733 (2025)

Ferrari, D. P.; Cobanoglu, O.; Sayedipour, S.; Luna, O.; Ferkel, S. A. M.; Agorku, D.; Perez, Y.; Cruz, L. J.; Albericio, F.; Trottein, F. et al.; Alves, F.; Markus, M. A.; Ramos Gomes, F.: Anti-Tumor Efficacy of a Mesothelin-Based Nanovaccine in a KPC Orthotopic Mouse Model of Pancreatic Cancer. Vaccines 13 (3), 314 (2025)

Sagar, M. M. R.; D'Amico, L.; Longo, E.; Persson, I. M.; Deyhle, R.; Tromba, G.; Bayat, S.; Alves, F.; Dullin, C.: Air artifact suppression in phase contrast micro-CT using conditional generative adversarial networks. Journal of Synchrotron Radiation (accepted)

Dullin, C.; Alves, F.: Einsatz von künstlicher Intelligenz in der Endoskopie zur Analyse von Gewebebiopsien. Die Gastroenterologie 20, pp. 44 - 53 (2025)

Ferreira, N.; Kulkarni, A.; Agorku, D.; Midelashvili, T.; Hardt, O.; Legler, T. J.; Ströbel, P.; Conradi, L.-C.; Alves, F.; Ramos Gomes, F. et al.; Markus, M. A.: OrganoIDNet: a deep learning tool for identification of therapeutic effects in PDAC organoid-PBMC co-cultures from time-resolved imaging data. Cellular Oncology 48, pp. 101 - 122 (2025)

Frohn, J.; Böddeker, F.; Reichardt, M.; Bruns, H.; Czajka, T.; Khan, A.; Broche, L.; Krisch, M.; Bravin, A.; Alves, F. et al.; Zschüntzsch, J.; Salditt, T.: Three-dimensional structure of entire hydrated murine hearts at histological resolution. Scientific Reports 15, 2766 (2025)

Papantonis, A.; Rogalla, S.; Dullin, C.; Alves, F.; Bohnenberger, H.: Neue Methoden am Übergang von der Forschung in die Routinediagnostik. Die Pathologie (2025)

Nolte, P.; Gröger, C. J.; Frey, C.; Richter, H.; Will, F.; Bäuerle, T.; Schilling, A. F.; Alves, F.; Rußmann, C.; Dullin, C.: Automated Targeted Sectioning of Resin-embedded Hard Tissue Specimen Using Micro-computed Tomography in Combination with Laser Microtomy. IEEE Transactions on Biomedical Engineering (2025)

Ferreira, N.; Alves, F.; Markus, A.: Organoid-Immune Cell Co-culture for Stable Live Imaging. In: Methods in Molecular Biology. Springer, New York, NY (2025)