Publications of D. I. Cherny

Cherny, D. I.; Brazdova, M.; Palecek, E.; Palecek, J.; Jovin, T. M.: Sequestering of p53 into DNA-protein filaments revealed by electron microscopy. Biophysical Chemistry 114 (2-3), doi:10.1016/j.bpc.2004.12.042, pp. 261 - 271 (2005)

Liu, Y.; Walter, S.; Stagi, M.; Cherny, D. I.; Letiembre, M.; Schulz-Schaeffer, W.; Heine, H.; Penke, B.; Neumann, H.; Fassbender, K.: LPS receptor (CD14): a receptor for phagocytosis of Alzheimer’s amyloid peptide. Brain 128 (8), doi:10.1093/brain/awh531, pp. 1778 - 1789 (2005)

Rasia, R. M.; Bertoncini, C. W.; Marsh, D.; Hoyer, W.; Cherny, D. I.; Zweckstetter, M.; Griesinger, C.; Jovin, T. M.; Fernandez, C. O.: Structural characterization of copper(II) binding to α-Synuclein: Insights into the bioinorganic chemistry of Parkinson's disease. Proceedings of the National Academy of Sciences of the United States of America 102, 10.1073/pnas.0407881102, pp. 4294 - 4299 (2005)

Demirel, M. C.; Cherny, D. I.: Clustering and diversity of fluctuations for proteins. Journal of Nanomedicine 1 (1), doi:10.1016/j.nano.2004.11.007, pp. 41 - 46 (2005)

Bentin, T.; Cherny, D. I.; Larsen, H. J.; Nielsen, P. E.: Transcription arrest caused by long nascent RNA chains. Biochimica et Biophysica Acta 1727, doi:10.1016/j.bbaexp.2004.12.006, pp. 97 - 105 (2005)

Smolina, I. V.; Cherny, D. I.; Nietupski, R. M.; Beals, T.; Smith, J.; Lane, D. J.; Broude, N. E.; Demidov, V. V.: High-density fluorescently labeled rolling-circle amplicons for DNA diagnostics. Analytical Biochemistry 347, pp. 152 - 155 (2005)

Cherny, D. I.; Hoyer, W.; Subramaniam, V.; Jovin, T. M.: Double-stranded DNA stimulates the fibrillation of α-synuclein in vitro and is associated with the mature fibrils: An electron microscopy study. Journal of Molecular Biology 344, doi:10.1016/j.jmb.2004.09.096, pp. 929 - 938 (2004)

Hoyer, W.; Cherny, D. I.; Subramaniam, V.; Jovin, T. M.: Impact of the acidic C-terminal region comprising amino acids 109-140 on α-synuclein aggregation in vitro. Biochemistry 43 (51), doi:10.1021/bi048453u, pp. 16233 - 16242 (2004)

Hoyer, W.; Cherny, D. I.; Subramaniam, V.; Jovin, T. M.: Rapid self-assembly of α-synuclein observed by in situ atomic force microscopy. Journal of Molecular Biology 340 (1), pp. 127 - 139 (2004)

Kuhn, H.; Cherny, D. I.; Demidov, V. V.; Frank-Kamenetskii, M. D.: Inducing and modulating anisotropic DNA bends by pseudocomplementary peptide nucleic acids. Proceedings of the National Academy of Sciences of the United States of America 101 (20), doi:10.1073/pnas.0308756101, pp. 7548 - 7553 (2004)

Antony, T.; Hoyer, W.; Cherny, D. I.; Heim, G.; Jovin, T. M.; Subramaniam, V.: Cellular polyamines promote the aggregation of α-synuclein. Journal of Biological Chemistry 278 (5), pp. 3235 - 3240 (2003)

Brazdova, M.; Palecek, J.; Cherny, D. I.; Billova, S.; Fojta, M.; Pecinka, P.; Vojtesek, B.; Jovin, T. M.; Palecek, E.: Role of tumor suppressor p53 domains in selective binding to supercoiled DNA. Nucleic Acids Research 30 (22), pp. 4966 - 4974 (2002)

Goehler, T.; Reimann, M.; Cherny, D. I.; Walter, K.; Warnecke, G.; Kim, E.; Deppert, W.: Specific interaction of p53 with target binding sites is determined by DNA conformation and is regulated by the C- terminal domain. Journal of Biological Chemistry 277 (43), pp. 41192 - 41203 (2002)

Pavlov, N. A.; Cherny, D. I.; Jovin, T. M.; Slesarev, A. I.: Nucleosome-like complex of the histone from the hyperthermophile Methanopyrus kandleri (MkaH) with linear DNA. Journal of Biomolecular Structure & Dynamics 20 (2), pp. 207 - 214 (2002)

Hoyer, W.; Antony, T.; Cherny, D. I.; Heim, G.; Jovin, T. M.; Subramaniam, V.: Dependence of α-synuclein aggregate morphology on solution conditions. Journal of Molecular Biology 322 (2), pp. 383 - 393 (2002)

Pavlov, N. A.; Cherny, D. I.; Heim, G.; Jovin, T. M.; Subramaniam, V.: Amyloid fibrils from the mammalian protein prothymosin α. FEBS Letters 517 (1-3), pp. 37 - 40 (2002)

Pavlov, N. A.; Cherny, D. I.; Nazimov, I. V.; Slesarev, A. I.; Subramaniam, V.: Identification, cloning and characterization of a new DNA- binding protein from the hyperthermophilic methanogen Methanopyrus kandleri. Nucleic Acids Research 30 (3), pp. 685 - 694 (2002)

Cherny, D. I.; Jovin, T. M.: Electron and scanning force microscopy studies of alterations in supercoiled DNA tertiary structure. Journal of Molecular Biology 313, pp. 295 - 307 (2001)

Jiao, Y.; Cherny, D. I.; Heim, G.; Jovin, T. M.; Schaeffer, T. E.: Dynamic interactions of p53 with DNA in solution by time-lapse atomic force microscopy. Journal of Molecular Biology 314, pp. 233 - 243 (2001)

Jett, S. D.; Cherny, D. I.; Subramaniam, V.; Jovin, T. M.: Scanning force microscopy of the complexes of p53 core domain with supercoiled DNA. Journal of Molecular Biology 299, pp. 585 - 592 (2000)