Publications

Journal Article (32)

1.
Journal Article
Barbarics, B.; Eildermann, K.; Kaderali, L.; Cyganek, L.; Plessmann, U.; Bodemeyer, J.; Paul, T.; Ströbel, P.; Urlaub, H.; Tirilomis, T. et al.; Lenz, C.; Bohnenberger, H.: Proteomic mapping of atrial and ventricular heart tissue in patients with aortic valve stenosis. Scientific Reports 11, 24389 (2021)
2.
Journal Article
James, C.; Lenz, C.; Urlaub, H.; Kehlenbach, R. H.: Sequestosome 1 is part of the interaction network of VAPB. International Journal of Molecular Sciences 22 (24), 13271 (2021)
3.
Journal Article
Mühlhausen, S.; Schmitt, H. D.; Plessmann, U.; Mienkus, P.; Sternisek, P.; Perl, T.; Weig, M.; Urlaub, H.; Bader, O.; Kollmar, M.: Proteogenomics analysis of CUG codon translation in the human pathogen Candida albicans. BMC Biology 19, 258 (2021)
4.
Journal Article
Güran, A.; Ji, Y.; Fang, P.; Pan, K.-T.; Urlaub, H.; Avkiran, M.; Lenz, C.: Quantitative analysis of the cardiac phosphoproteome in response to acute β-adrenergic receptor stimulation in vivo. International Journal of Molecular Sciences 22 (22), 12584 (2021)
5.
Journal Article
Fianu, I.; Chen, Y.; Dienemann, C.; Dybkov, O.; Linden, A.; Urlaub, H.; Cramer, P.: Structural basis of Integrator-mediated transcription regulation. Science 374 (6569), pp. 883 - 887 (2021)
6.
Journal Article
Cruz-Zaragoza, L. D.; Dennerlein, S.; Linden, A.; Yousefi, R.; Lavdovskaia, E.; Aich, A.; Falk, R. R.; Gomkale, R.; Schöndorf, T.; Bohnsack, M. T. et al.; Richter-Dennerlein, R.; Urlaub, H.; Rehling, P.: An in vitro system to silence mitochondrial gene expression. Cell 184 (23), pp. 5824 - 5837.e15 (2021)
7.
Journal Article
Aquino, G. R. R.; Hackert, P.; Krogh, N.; Pan, K. T.; Jaafar, M.; Henras, A. K.; Nielsen, H.; Urlaub, H.; Bohnsack, K. E.; Bohnsack, M. T.: The RNA helicase Dbp7 promotes domain V/VI compaction and stabilization of inter-domain interactions during early 60S assembly. Nature Communications 12, 6152 (2021)
8.
Journal Article
Kokic, G.; Wagner, F. R.; Chernev, A.; Urlaub, H.; Cramer, P.: Structural basis of human transcription–DNA repair coupling. Nature 598 (7880), pp. 368 - 372 (2021)
9.
Journal Article
Gomkale, R.; Linden, A.; Neumann, P.; Schendzielorz, A. B.; Stoldt, S.; Dybkov, O.; Kilisch, M.; Schulz, C.; Cruz-Zaragoza, L. D.; Schwappach, B. et al.; Ficner, R.; Jakobs, S.; Urlaub, H.; Rehling, P.: Mapping protein interactions in the active TOM-TIM23 supercomplex. Nature Communications 12, 5715 (2021)
10.
Journal Article
Zhang, Z.; Rigo, N.; Dybkov, O.; Fourmann, J. B.; Will, C. L.; Kumar, V.; Urlaub, H.; Stark, H.; Lührmann, R.: Structural insights into how Prp5 proofreads the pre-mRNA branch site. Nature 596 (7871), pp. 296 - 300 (2021)
11.
Journal Article
Helm, M. S.; Dankovich, T. M.; Mandad, S.; Rammner, B.; Jähne, S.; Salimi, V.; Koerbs, C.; Leibrandt, R.; Urlaub, H.; Schikorski, T. et al.; Rizzoli, S. O.: A large-scale nanoscopy and biochemistry analysis of postsynaptic dendritic spines. Nature Neuroscience 24 (8), pp. 1151 - 1162 (2021)
12.
Journal Article
Chen, Y.; Vos, S. M.; Dienemann, C.; Ninov, M.; Urlaub, H.; Cramer, P.: Allosteric transcription stimulation by RNA polymerase II super elongation complex. Molecular Cell 81 (16), pp. 3386 - 3399.e10 (2021)
13.
Journal Article
Mishto, M.; Rodriguez-Hernandez, G.; Neefjes, J.; Urlaub, H.; Liepe, J.: Response: Commentary: An In Silico–In Vitro Pipeline Identifying an HLA-A*02:01+ KRAS G12V+ Spliced Epitope Candidate for a Broad Tumor-Immune Response in Cancer Patients. Frontiers in immunology 12, 679836 (2021)
14.
Journal Article
Fang, P.; Ji , Y.; Silbern, I.; Viner, R.; Oellerich, T.; Pan, K. T.; Urlaub, H.: Evaluation and optimization of high-field asymmetric waveform ion-mobility spectrometry for multiplexed quantitative site-specific N-glycoproteomics. Analytical Chemistry 93 (25), pp. 8846 - 8855 (2021)
15.
Journal Article
Martinez Hernandez, A.; Silbern, I.; Geffers, I.; Tatenhorst, L.; Becker, S.; Urlaub, H.; Zweckstetter, M.; Griesinger, C.; Eichele, G.: Low-Expressing synucleinopathy mouse models based on oligomer-forming mutations and C-terminal truncation of α-synuclein. Frontiers in Neuroscience 15, 643391 (2021)
16.
Journal Article
Hillen, H. S.; Lavdovskaia, E.; Nadler, F.; Hanitsch, E.; Linden, A.; Bohnsack, K. E.; Urlaub, H.; Richter-Dennerlein, R.: Structural basis of GTPase-mediated mitochondrial ribosome biogenesis and recycling. Nature Communications 12, 3672 (2021)
17.
Journal Article
Yildirim, A.; Mozaffari-Jovin, S.; Wallisch, A. K.; Schäfer, J.; Ludwig, S. E. J.; Urlaub, H.; Lührmann, R.; Wolfrum, U.: SANS (USH1G) regulates pre-mRNA splicing by mediating the intra-nuclear transfer of tri-snRNP complexes. Nucleic Acids Research 49 (10), pp. 5845 - 5866 (2021)
18.
Journal Article
Osman, S.; Mohammad, E.; Lidschreiber, M.; Stuetzer, A.; Bazsó, F. L.; Maier, K. C.; Urlaub, H.; Cramer, P.: The Cdk8 kinase module regulates interaction of the mediator complex with RNA polymerase II. Journal of Biological Chemistry 296, 100734 (2021)
19.
Journal Article
Wensien, M.; Rabe von Pappenheim, F.; Funk, L. M.; Kloskowski, P.; Curth, U.; Diederichsen, U.; Uranga, J.; Ye, J.; Fang, P.; Pan, K. T. et al.; Urlaub, H.; Mata, R. A.; Sautner, V.; Tittmann, K.: A lysine–cysteine redox switch with an NOS bridge regulates enzyme function. Nature 593 (7859), pp. 460 - 464 (2021)
20.
Journal Article
Hallumi, E.; Shalah, R.; Lo, W. L.; Corso, J.; Oz, I.; Beach, D.; Wittman, S.; Isenberg, A.; Sela, M.; Urlaub, H. et al.; Weiss, A.; Yablonski, D.: Itk promotes the integration of TCR and CD28 costimulation through its direct substrates SLP-76 and Gads. The Journal of Immunology 206 (10), pp. 2322 - 2337 (2021)
21.
Journal Article
Naarman-de Vries, I. S.; Senatore, R.; Moritz, B.; Marx, G.; Urlaub, H.; Niessing, D.; Ostareck, D. H.; Ostareck-Lederer, A.: Methylated HNRNPK acts on RPS19 to regulate ALOX15 synthesis in erythropoiesis. Nucleic Acids Research 49 (6), pp. 3507 - 3523 (2021)
22.
Journal Article
Wohlgemuth, I.; Garofalo, R.; Samatova, E. N.; Günenç, A. N.; Lenz, C.; Urlaub, H.; Rodnina, M. V.: Translation error clusters induced by aminoglycoside antibiotics. Nature Communications 12, 1830 (2021)
23.
Journal Article
Peper, J.; Kownatzki-Danger, D.l.; Weninger, G.; Seibertz, F.; Pronto, J. R. D.; Sutanto, H.; Pacheu-Grau, D.; Hindmarsh, R.; Brandenburg, S.; Kohl, T. et al.; Hasenfuss, G.; Gotthardt, M.; Rog-Zielinska, E. A.; Wollnik, B.; Rehling, P.; Urlaub, H.; Wegener, J.; Heijman, J.; Voigt, N.; Cyganek, L.; Lenz, C.; Lehnart, S. E.: Caveolin3 stabilizes McT1-mediated lactate/proton transport in cardiomyocytes. Circulation Research 128 (6), pp. e102 - e120 (2021)
24.
Journal Article
Barysch, S. V.; Stankovic‐Valentin, N.; Miedema, K.-T.; Karaca, S.; Doppel, J.; Nait Achour, T.; Vasudeva, A.; Wolf, L.; Sticht, C.; Urlaub, H. et al.; Melchior, F.: Transient deSUMOylation of IRF2BP proteins controls early transcription in EGFR signaling. EMBO Reports 22 (3), e49651 (2021)
25.
Journal Article
Yatsenko, A. S.; Kucherenko, M. M.; Xie, Y.; Urlaub, H.; Shcherbata, H. R.: Exocyst-mediated membrane trafficking of the lissencephaly-associated ECM receptor dystroglycan is required for proper brain compartmentalization. eLife 10, e63868 (2021)
26.
Journal Article
Szczęśniak, P.; Henke, T.; Fröhlich, S.; Plessmann, U.; Urlaub, H.; Leng, L.; Bucala, R.; Grosse, R.; Meinhardt, A.; Klug, J.: Extracellular MIF, but not its homologue D-DT, promotes fibroblast motility independent of its receptor CD74/CD44. Journal of Cell Science 134 (3), jcs217356 (2021)
27.
Journal Article
Zheng, X.; Zhang, L.; Kuang, Y.; Venkataramani, V.; Jin, F.; Hein, K.; Zafeiriou, M. P.; Lenz, C.; Moebius, W.; Kilic, E. et al.; Hermann, D. M.; Weber, M. S.; Urlaub, H.; Zimmermann, W.-H.; Bähr, M.; Doeppner, T. R.: Extracellular vesicles derived from neural progenitor cells: A preclinical evaluation for stroke treatment in mice. Translational Stroke Research 12 (1), pp. 185 - 203 (2021)
28.
Journal Article
Valpadashi, A.; Callegari, S.; Linden, A.; Neumann, P.; Ficner, R.; Urlaub, H.; Deckers, M.; Rehling, P.: Defining the architecture of the human TIM22 complex by chemical crosslinking. FEBS Letters 595 (2), pp. 157 - 168 (2021)
29.
Journal Article
Kraxner, J.; Lorenz, C.; Menzel, J.; Parfentev, I.; Silbern, I.; Denz, M.; Urlaub, H.; Schwappach, B.; Köster, S.: Post-translational modifications soften vimentin intermediate filaments. Nanoscale 13 (1), pp. 380 - 387 (2021)
30.
Journal Article
Blersch, K. F.; Burchert, J.-P.; August, S.-C.; Welp, L.; Neumann, P.; Köster, S.; Urlaub, H.; Ficner, R.: Structural model of the M7G46 methyltransferase TrmB in complex with tRNA. RNA Biology 18 (12), pp. 2466 - 2479 (2021)
31.
Journal Article
Sievers, K.; Welp, L.; Urlaub, H.; Ficner, R.: Structural and functional insights into human tRNA guanine transgylcosylase. RNA Biology 18 (Suppl. 1), pp. 382 - 396 (2021)
32.
Journal Article
Silbern, I.; Pan, K. T.; Fiosins, M.; Bonn, S.; Rizzoli, S. O.; Fornasiero, E. F.; Urlaub, H.; Jahn, R.: Protein phosphorylation in depolarized synaptosomes: Dissecting primary effects of calcium from synaptic vesicle cycling. Molecular and Cellular Proteomics 20, 100061 (2021)

Book Chapter (2)

33.
Book Chapter
Rozanova, S.; Barkovits, K.; Nikolov, M.; Schmidt, C.; Urlaub, H.; Marcus, K.: Quantitative mass spectrometry-based proteomics: An overview. In: Quantitative Methods in Proteomics, 2. ed. Ed., pp. 85 - 116 (Eds. Marcus, K.; Eisenacher, M.; Sitek, B.). Humana Pr.; Springer, New York (2021)
34.
Book Chapter
Silbern, I.; Fang, P.; Ji, Y.; Lenz, C.; Urlaub, H.; Pan, K. T.: Relative quantification of phosphorylated and glycosylated peptides from the same sample using isobaric chemical labelling with a two-step enrichment strategy. In: Quantitative Methods in Proteomics, 2. ed Ed., pp. 185 - 203 (Eds. Marcus, K.; Eisenacher, M.; Sitek, B.). Humana Pr.; Springer, New York (2021)
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