Max Planck Institute for Multidisciplinary Sciences

Publications

Journal Article (444)

1.

Journal Article

Dai, Y.; Ignatyeva, N.; Xu, H.; Wali, R.; Toischer, K.; Brandenburg, S.; Lenz, C.; Pronto, J.; Fakuade, F. E.; Sossalla, S. et al.; Zeisberg, E. M.; Janshoff, A.; Kutschka, I.; Voigt, N.; Urlaub, H.; Rasmussen, T. B.; Mogensen, J.; Lehnart, S. E.; Hasenfuss, G.; Ebert, A.: An Alternative Mechanism of Subcellular Iron Uptake Deficiency in Cardiomyocytes. Circulation Research 133 (2), pp. e19 - e46 (2023)

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2.

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Witzenberger, M.; Burczyk, S.; Settele, D.; Mayer, W.; Welp, L. M.; Heiss, M.; Wagner, M.; Monecke, T.; Janowski, R.; Carell, T. et al.; Urlaub, H.; Hauck, S. M.; Voigt, A.; Niessing, D.: Human TRMT2A methylates tRNA and contributes to translation fidelity. Nucleic Acids Research, gkad565 (2023)

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3.

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Nguyen, A.; Lugarini, F.; David, C.; Hosnani, P.; Alagöz, Ç.; Friedrich, A.; Schlütermann, D.; Knotkova, B.; Patel, A.; Parfentev, I. et al.; Urlaub, H.; Meinecke, M.; Stork, B.; Faesen, A. C.: Metamorphic proteins at the basis of human autophagy initiation and lipid transfer. Molecular Cell 83 (12), pp. 2077 - 2090.e12 (2023)

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4.

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Quentin, D.; Schuhmacher, J.S.; Klink, B.U.; Lauer, J.; Shaikh, T.R.; Huis in ’t Veld, P.J.; Welp, L. M.; Urlaub, H.; Zerial, M.; Raunser, S.: Structural basis of mRNA binding by the human FERRY Rab5 effector complex. Molecular Cell 83 (11), pp. 1856 - 1871.e9 (2023)

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5.

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Schmitzová, J.; Cretu, C.; Dienemann, C.; Urlaub, H.; Pena, V.: Structural basis of catalytic activation in human splicing. Nature 617, pp. 842 - 850 (2023)

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6.

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Scheich, S.; Chen, J.; Liu, J.; Schnutgen, F.; Enssle, J. C.; Ceribelli, M.; Thomas, C. J.; Choi, J.; Morris, V.; Hsiao, T. et al.; Nguyen, H.; Wang, B.; Bolomsky, A.; Phelan, J. D.; Corcoran, S.; Urlaub, H.; Young, R. M.; Haupl, B.; Wright, G. W.; Huang, D. W.; Ji, Y.; Yu, X.; Xu, W.; Yang, Y.; Zhao, H.; Muppidi, J.; Pan, K.-T.; Oellerich, T.; Staudt, L. M.: Targeting N-linked Glycosylation for the Therapy of Aggressive Lymphomas. Cancer Discovery, CD-22-1401 (2023)

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7.

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Cheng, S.; Altmeppen, G.; So, C.; Welp, L.; Penir, S. M.; Ruhwedel, T.; Menelaou, K.; Harasimov, K.; Stützer, A.; Blayney, M. et al.; Elder, K.; Möbius, W.; Urlaub, H.; Schuh, M.: Mammalian Oocytes Store mRNAs in a Mitochondria-Associated Membraneless Compartment. Obstetrical & Gynecological Survey 78 (5), pp. 280 - 281 (2023)

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8.

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Jia, J.; Hilal, T.; Bohnsack, K. E.; Chernev, A.; Tsao, N.; Bethmann, J.; Arumugam, A.; Parmely, L.; Holton, N.; Loll, B. et al.; Mosammaparast, N.; Bohnsack, M. T.; Urlaub, H.; Wahl, M. C.: Extended DNA threading through a dual-engine motor module of the activating signal co-integrator 1 complex. Nature Communications 14, 1886 (2023)

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9.

Journal Article

Dybkov, O.; Preußner, M.; El Ayoubi, L.; Feng, V.-Y.; Harnisch, C.; Merz, K.; Leupold, P.; Yudichev, P.; Agafonov, D. E.; Will, C. L. et al.; Girard, C.; Dienemann, C.; Urlaub, H.; Kastner, B.; Heyd, F.; Lührmann, R.: Regulation of 3′ splice site selection after step 1 of splicing by spliceosomal C* proteins. Science Advances 9 (9), eadf178 (2023)

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10.

Journal Article

Pörschke, M.; Rodríguez-González, I.; Parfentev, I.; Urlaub, H.; Kehlenbach, R. H.: Transportin 1 is a major nuclear import receptor of the nitric oxide synthase interacting protein. Journal of Biological Chemistry 299 (3), 102932 (2023)

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11.

Journal Article

Schminke, B.; Kauffmann, P.; Brockmeyer, P.; Miosge, N.; Lenz, C.; Schubert, A.: The Proteomes of Oral Cells Change during Co-Cultivation with Aggregatibacter actinomycetemcomitans and Eikenella corrodens. Biomedicines 11 (3), 700 (2023)

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12.

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Castro-Hernández, R.; Berulava, T.; Metelova, M.; Epple, R.; Centeno, T. P.; Richter, J.; Kaurani, L.; Pradhan, R.; Sakiba, M. S.; Burkhardt, S. et al.; Ninov, M.; Bohnsack, K. E.; Bohnsack, M. T.; Delalle, I.; Fischer, A.: Conserved reduction of m⁶A RNA modifications during aging and neurodegeneration is linked to changes in synaptic transcripts. Proceedings of the National Academy of Sciences of the United States of America 120 (9), e2204933120 (2023)

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13.

Journal Article

Wang, H.; Schilbach, S.; Ninov, M.; Urlaub, H.; Cramer, P.: Structures of transcription preinitiation complex engaged with the +1 nucleosome. Nature Structural and Molecular Biology 30, pp. 226 - 232 (2023)

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14.

Journal Article

Keil, P.; Wulf, A.; Kachariya, N.; Reuscher, S.; Huhn, K.; Silbern, I.; Altmuller, J.; Keller, M.; Stehle, R.; Zarnack, K. et al.; Sattler, M.; Urlaub, H.; Sträßer, K.: Npl3 functions in mRNP assembly by recruitment of mRNP components to the transcription site and their transfer onto the mRNA. Nucleic Acids Research 51 (2), pp. 831 - 851 (2023)

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15.

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Schoger, E.; Bleckwedel, F.; Germena, G.; Rocha, C.; Tucholla, P.; Sobitov, I.; Möbius, W.; Sitte, M.; Lenz, C.; Samak, M. et al.; Hinkel, R.; Varga, Z. V.; Giricz, Z.; Salinas, G.; Gross, J. C.; Zelarayan, L. C.: Single-cell transcriptomics reveal extracellular vesicles secretion with a cardiomyocyte proteostasis signature during pathological remodeling. Communications Biology 6 (1), 79 (2023)

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16.

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Franz, A.; Weber, A. I.; Preussner, M.; Dimos, N.; Stumpf, A.; Ji, Y.; Moreno-Velasquez, L.; Voigt, A.; Schulz, F.; Neumann, A. et al.; Kuropka, B.; Kuehn, R.; Urlaub, H.; Schmitz, D.; Wahl, M. C.; Heyd, F.: Branch point strength controls species-specific CAMK2B alternative splicing and regulates LTP. Life science alliance 6 (3), e202201826 (2022)

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17.

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Brás, I. C.; Khani, M. H.; Vasili, E.; Möbius, W.; Riedel, D.; Parfentev, I.; Gerhardt, E.; Fahlbusch, C.; Urlaub, H.; Zweckstetter, M. et al.; Gollisch, T.; Outeiro, T. F.: Molecular Mechanisms Mediating the Transfer of Disease-Associated Proteins and Effects on Neuronal Activity. Journal of Parkinson's Disease: JPD 12, pp. 2397 - 2422 (2022)

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18.

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Brandenburg, S.; Drews, L.; Schönberger, H.-L.; Jacob, C. F.; Paulke, N. J.; Beuthner, B. E.; Topci, R.; Kohl, T.; Neuenroth, L.; Kutschka, I. et al.; Urlaub, H.; Kück, F.; Leha, A.; Friede, T.; Seidler, T.; Jacobshagen, C.; Toischer, K.; Puls, M.; Hasenfuß, G.; Lenz, C.; Lehnart, S. E.: Direct proteomic and high-resolution microscopy biopsy analysis identifies distinct ventricular fates in severe aortic stenosis. Journal of Molecular and Cellular Cardiology (London) 173, pp. 1 - 15 (2022)

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19.

Journal Article

Giménez, E.; Urlaub, H.; Lockhart, L. J. F.: Photo-tuneable protein nitration by sensitiser tris(bipyridine)-Ruthenium(II) chloride complex. Nitric Oxide - Biology and Chemistry 129 (1), pp. 63 - 73 (2022)

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20.

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Rengachari, S.; Schilbach, S.; Kaliyappan, T.; Gouge, J.; Zumer, K.; Schwarz, J.; Urlaub, H.; Dienemann, C.; Vannini, A.; Cramer, P.: Structural basis of SNAPc-dependent snRNA transcription initiation by RNA polymerase II. Nature Structural and Molecular Biology 29, pp. 1159 - 1169 (2022)

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21.

Journal Article

Ditte, Z.; Silbern, I.; Ditte, P.; Urlaub, H.; Eichele, G.: Extracellular vesicles derived from the choroid plexus trigger the differentiation of neural stem cells. Journal of extracellular vesicles 11 (11), 12276 (2022)

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22.

Journal Article

Brás, I. C.; Khani, M. H.; Riedel, D.; Parfentev, I.; Gerhardt, E.; van Riesen, C.; Urlaub, H.; Gollisch, T.; Outeiro, T. F.: Ectosomes and exosomes modulate neuronal spontaneous activity. Journal of Proteomics 269, 104721 (2022)

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23.

Journal Article

Cheng, S.; Altmeppen, G.; So, C.; Welp, L.; Penir, S. M.; Ruhwedel, T.; Menelaou, K.; Harasimov, K.; Stützer, A.; Blayney, M. et al.; Elder, K.; Möbius, W.; Urlaub, H.; Schuh, M.: Mammalian oocytes store mRNAs in a mitochondria-associated membraneless compartment. Science 378 (6617), eabq4835 (2022)

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24.

Journal Article

Bolgi, O.; Silva-Garcia, M.; Ross, B.; Pilla, E.; Kari, V.; Killisch, M.; Spitzner, M.; Stark, N.; Lenz, C.; Weiss, K. et al.; Donzelli, L.; Gorrell, M. D.; Grade, M.; Riemer, J.; Urlaub, H.; Dobbelstein, M.; Huber, R.; Geiss-Friedlander, R.: Dipeptidyl peptidase 9 triggers BRCA2 degradation and promotes DNA damage repair. EMBO Reports 23 (10), e54136 (2022)

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25.

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Jarausch, J.; Neuenroth, L.; Andag, R.; Leha, A.; Fischer, A.; Asif, A. R.; Lenz, C.; Eidizadeh, A.: Influence of Shear Stress, Inflammation and BRD4 Inhibition on Human Endothelial Cells: A Holistic Proteomic Approach. Cells 11 (19), 3086 (2022)

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26.

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Stejerean-Todoran, I.; Zimmermann, K.; Gibhardt, C. S.; Vultur, A.; Ickes, C.; Shannan, B.; Rio, Z. B. d.; Wölling, A.; Cappello, S.; Sung, H.-M. et al.; Shumanska, M.; Zhang, X.; Nanadikar, M.; Latif, M. U.; Wittek, A.; Lange, F.; Waters, A.; Brafford, P.; Wilting, J.; Urlaub, H.; Katschinski, D. M.; Rehling, P.; Lenz, C.; Jakobs, S.; Ellenrieder, V.; Roesch, A.; Schön, M. P.; Herlyn, M.; Stanisz, H.; Bogeski, I.: MCU controls melanoma progression through a redox-controlled phenotype switch. EMBO Reports 23, e54746 (2022)

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27.

Journal Article

Krebs, T.; Kilic, I.; Neuenroth, L.; Wasselin, T.; Ninov, M.; Tetens, J.; Lenz, C.: A multiplexed parallel reaction monitoring assay to monitor bovine pregnancy-associated glycoproteins throughout pregnancy and after gestation. PLoS One 17 (9), e0271057 (2022)

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28.

Journal Article

Linnemannstöns, K.; Karuna M, P.; Witte, L.; Choezom, D.; Honemann-Capito, M.; Lagurin, A. S.; Schmidt, C. V.; Shrikhande, S.; Steinmetz, L.-K.; Möbius, W. et al.; Lenz, C.; Gross, J. C.: Microscopic and biochemical monitoring of endosomal trafficking and extracellular vesicle secretion in an endogenous in vivo model. Journal of extracellular vesicles 11 (9), 12263 (2022)

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29.

Journal Article

Werner, M.; Dyas, A.; Parfentev, I.; Schmidt, G. E.; Mieczkowska, I. K.; Müller-Kirschbaum, L. C.; Müller, C.; Kalkhof, S.; Reinhardt, O.; Urlaub, H. et al.; Alves, F.; Gallwas, J.; Prokakis, E.; Wegwitz, F.: ROBO3s: a novel ROBO3 short isoform promoting breast cancer aggressiveness. Cell Death and Disease 13, 762 (2022)

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30.

Journal Article

Koutsoumparis, A.; Welp, L.; Wulf, A.; Urlaub, H.; Meierhofer, D.; Börno, S.; Timmermann, B.; Busack, I.; Bringmann, H.: Sleep neuron depolarization promotes protective gene expression changes and FOXO activation. Current Biology 32 (10), pp. 2248 - 2262.e9 (2022)

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31.

Journal Article

Kluever, V.; Russo, B.; Mandad, S.; Kumar, N. H.; Alevra, M.; Ori, A.; Rizzoli, S. O.; Urlaub, H.; Schneider, A.; Fornasiero, E. F.: Protein lifetimes in aged brains reveal a proteostatic adaptation linking physiological aging to neurodegeneration. Science Advances 8, eabn4437 (2022)

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32.

Journal Article

Yi, S.-H.; Petrychenko, V.; Schliep, J. E.; Goyal, A.; Linden, A.; Chari, A.; Urlaub, H.; Stark, H.; Rodnina, M. V.; Adio, S. et al.; Fischer, N.: Conformational rearrangements upon start codon recognition in human 48S translation initiation complex. Nucleic Acids Research 50 (9), pp. 5282 - 5298 (2022)

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33.

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Upmanyu, N.; Jin, J.; von der Emde, H.; Ganzella, M.; Bösche, L.; Malviya, V. N.; Zhuleku, E.; Politi, A. Z.; Ninov, M.; Silbern, I. et al.; Leutenegger, M.; Urlaub, H.; Riedel, D.; Preobraschenski, J.; Milosevic, I.; Hell, S. W.; Jahn, R.; Sambandan, S.: Colocalization of different neurotransmitter transporters on synaptic vesicles is sparse except for VGLUT1 and ZnT3. Neuron 110 (9), pp. 1483 - 1497 (2022)

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34.

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Mishto, M.; Horokhovskyi, Y.; Cormican, J. A.; Yang, X.; Lynham, S.; Urlaub, H.; Liepe, J.: Database search engines and target database features impinge upon the identification of post‐translationally cis‐spliced peptides in HLA class I immunopeptidomes. Proteomics 22 (10), e2100226 (2022)

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35.

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Wortz, J.; Smith, V.; Fallmann, J.; König, S.; Thuraisingam, T.; Walther, P.; Urlaub, H.; Stadler, P. F.; Allers, T.; Hille, F. et al.; Marchfelder, A.: Cas1 and Fen1 Display Equivalent Functions During Archaeal DNA Repair. Frontiers in Microbiology 13, 822304 (2022)

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supplementary-material

36.

Journal Article

Yao, Y.; Kim, G.; Shafer, S.; Chen, Z.; Kubo, S.; Ji, Y.; Luo, J.; Yang, W.; Perner, S. P.; Kanellopoulou, C. et al.; Park, A. Y.; Jiang, P.; Li, J.; Baris, S.; Aydiner, E.K.; Ertem, D.; Mulder, D. J.; Warner, N.; Griffiths, A. M.; Topf-Olivestone, C.; Kori, M.; Werner, L...; Ouahed, J.; Field, M.; Liu, C.; Schwarz, B.; Bosio, C. M.; Ganesan, S.; Song, J.; Urlaub, H.; Oellerich, T.; Malaker, S. A.; Zheng, L.; Bertozzi, C. R.; Zhang, Y.; Matthews, H.; Montgomery, W.; Shih, H.-Y.; Jiang, J.; Jones, M.; Baras, A.; Shuldiner, A.; Gonzaga-Jauregui, C.; Snapper, S. B.; Muise, A. M.; Shouval, D. S.; Ozen, A.; Pan, K.-T.; Wu, C.; Lenardo, M. J.: Mucus sialylation determines intestinal host-commensal homeostasis. Cell 185 (7), pp. 1172 - 1188.e28 (2022)

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37.

Journal Article

Düster, R.; Ji, Y.; Pan, K.-T.; Urlaub, H.; Geyer, M.: Functional characterization of the human Cdk10/Cyclin Q complex. Open Biology 12 (3), 210381 (2022)

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38.

Journal Article

Georgiou, M.; Yang, C.; Atkinson, R.; Pan, K.‐.; Buskin, A.; Molina, M. M.; Collin, J.; Al‐Aama, J.; Goertler, F.; Ludwig, S. E. J. et al.; Davey, T.; Lührmann, R.; Nagaraja‐Grellscheid, S.; Johnson, C. A.; Ali, R.; Armstrong, L.; Korolchuk, V.; Urlaub, H.; Mozaffari‐Jovin, S.; Lako, M.: Activation of autophagy reverses progressive and deleterious protein aggregation in PRPF31 patient‐induced pluripotent stem cell‐derived retinal pigment epithelium cells. Clinical and Translational Medicine 12 (3), e759 (2022)

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39.

Journal Article

Chang, H.-F.; Schirra, C.; Ninov, M.; Hahn, U.; Ravichandran, K.; Krause, E.; Becherer, U.; Bálint, Š.; Harkiolaki, M.; Urlaub, H. et al.; Valitutti, S.; Baldari, C. T.; Dustin, M. L.; Jahn, R.; Rettig, J.: Identification of distinct cytotoxic granules as the origin of supramolecular attack particles in T lymphocytes. Nature Communications 13, 1029 (2022)

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40.

Journal Article

Fang, P.; Ji, Y.; Oellerich, T.; Urlaub, H.; Pan, K.-T.: Strategies for Proteome-Wide Quantification of Glycosylation Macro- and Micro-Heterogeneity. International Journal of Molecular Sciences 23 (3), 1609 (2022)

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41.

Journal Article

Wilke, A. C.; Doebele, C.; Zindel, A.; Lee, K. S.; Rieke, S. A.; Ceribelli, M.; Comoglio, F.; Phelan, J.D.; Wang, J. Q.; Pikman, Y. et al.; Jahn, D.; Häupl, B.; Schneider, C.; Scheich, S.; Tosto, F. A.; Bohnenberger, H.; Stauder, P.; Schnütgen, F.; Slabicki, M.; Coulibaly, Z. A.; Wolf, S.; Bojarczuk, K.; Chapuy, B.; Brandts, C. H.; Stroebel, P.; Lewis, C. A.; Engelke, M.; Xu, X.; Kim, H.; Dang, T. H.; Schmitz, R.; Hodson, D. J.; Stegmaier, K.; Urlaub, H.; Serve, H.; Schmitt, C. A.; Kreuz, F.; Knittel, G.; Rabinowitz, J. D.; Reinhardt, H. C.; Vander Heiden, M. G.; Thomas, C.; Staudt, L. M.; Zenz, T.; Oellerich, T.: SHMT2 inhibition disrupts the TCF3 transcriptional survival program in Burkitt lymphoma. Blood 139 (4), pp. 538 - 553 (2022)

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42.

Journal Article

Elakad, O.; Häupl, B.; Labitzky, V.; Yao, S.; Küffer, S.; von Hammerstein-Equord, A.; Danner, B. C.; Jücker, M.; Urlaub, H.; Lange, T. et al.; Ströbel, P.; Oellerich, T.; Bohnenberger, H.: Activation of CD44/PAK1/AKT signaling promotes resistance to FGFR1 inhibition in squamous-cell lung cancer. npj Precision Oncology 6, 52 (2022)

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43.

Journal Article

Farkas, Á.; Urlaub, H.; Bohnsack, K. E.; Schwappach, B.: Regulated targeting of the monotopic hairpin membrane protein Erg1 requires the GET pathway. Journal of Cell Biology 221 (6), e202201036 (2022)

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44.

Journal Article

Heidemann, J. L.; Neumann, P.; Krüger, L.; Wicke, D.; Vinhoven, L.; Linden, A.; Dickmanns, A.; Stülke, J.; Urlaub, H.; Ficner, R.: Structural basis for c-di-AMP–dependent regulation of the bacterial stringent response by receptor protein DarB. Journal of Biological Chemistry 298 (7), 102144 (2022)

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45.

Journal Article

Jayavelu, A. K.; Wolf, S.; Buettner, F.; Alexe, G.; Häupl, B.; Comoglio, F.; Schneider, C.; Doebele, C.; Fuhrmann, D. C.; Wagner, S. et al.; Donato, E.; Andresen, C.; Wilke, A. C.; Zindel, A.; Jahn, D.; Splettstoesser, B.; Plessmann, U.; Münch, S.; Abou-El-Ardat, K.; Makowka, P.; Acker, F.; Enssle, J. C.; Cremer, A.; Schnütgen, F.; Kurrle, N.; Chapuy, B.; Löber, J.; Hartmann, S.; Wild, P. J.; Wittig, I.; Hübschmann, D.; Kaderali, L.; Cox, J.; Brüne, B.; Röllig, C.; Thiede, C.; Steffen, B.; Bornhäuser, M.; Trumpp, A.; Urlaub, H.; Stegmaier, K.; Serve, H.; Mann, M.; Oellerich, T.: The proteogenomic subtypes of acute myeloid leukemia. Cancer Cell 40 (3), pp. 301 - 317.e12 (2022)

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46.

Journal Article

Meyer, A.; Kehl, A.; Cui, C.; Reichardt, F. A. K.; Hecker, F.; Funk, L.-M.; Ghosh, M. K.; Pan, K. T.; Urlaub, H.; Tittmann, K. et al.; Stubbe, J.; Bennati, M.: 19F Electron-nuclear double resonance reveals interaction between redox-active tyrosines across the α/β interface of E. coli ribonucleotide reductase. Journal of the American Chemical Society 144, pp. 11270 - 11282 (2022)

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47.

Journal Article

Moll, A.; Ramirez, L. M.; Ninov, M.; Schwarz, J.; Urlaub, H.; Zweckstetter, M.: Hsp multichaperone complex buffers pathologically modified Tau. Nature Communications 13, 3668 (2022)

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48.

Journal Article

Richter, A.; Fichtner, A.; Joost, J.; Brockmeyer, P.; Kauffmann, P.; Schliephake, H.; Hammerstein‐Equord, A.; Kueffer, S.; Urlaub, H.; Oellerich, T. et al.; Ströbel, P.; Bohnenberger, H.; Bremmer, F.: Quantitative proteomics identifies biomarkers to distinguish pulmonary from head and neck squamous cell carcinomas by immunohistochemistry. The Journal of Pathology: Clinical Research 8 (1), pp. 33 - 47 (2022)

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49.

Journal Article

Richter, A.; Fichtner, A.; Joost, J.; Brockmeyer, P.; Kauffmann, P.; Schliephake, H.; Hammerstein‐Equord, A.; Kueffer, S.; Urlaub, H.; Oellerich, T. et al.; Ströbel, P.; Bohnenberger, H.; Bremmer, F.: Quantitative proteomics identifies biomarkers to distinguish pulmonary from head and neck squamous cell carcinomas by immunohistochemistry. The Journal of Pathology: Clinical Research 8 (1), pp. 33 - 47 (2022)

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50.

Journal Article

Weninger, G.; Pochechueva, T.; El Chami, D.; Luo, X.; Kohl, T.; Brandenburg, S.; Urlaub, H.; Guan, K.; Lenz, C.; Lehnart, S. E.: Calpain cleavage of Junctophilin-2 generates a spectrum of calcium-dependent cleavage products and DNA-rich NT1-fragment domains in cardiomyocytes. Scientific Reports 12, 10387 (2022)

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