Max Planck Institute for Multidisciplinary Sciences

Publications

Journal Article (497)

1.

Journal Article

Yousefi, R.; Cruz-Zaragoza, L.D.; Valpadashi, A.; Hansohn, C.; Dahal, D.; Richter-Dennerlein, R.; Rizzoli, S.; Urlaub, H.; Rehling, P.; Pacheu-Grau, D.: A microscopy-based screen identifies cellular kinases modulating mitochondrial translation. Cell Reports 44 (1), 115143 (2025)

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Fendler, N. L.; Ly, J.; Welp, L. M.; Lu, D.; Schulte, F.; Urlaub, H.; Vos, S. M.: Identification and characterization of a human MORC2 DNA binding region that is required for gene silencing. Nucleic Acids Research, gkae1273 (2024)

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Hollstein, M. M.; Traidl, S.; Heetfeld, A.; Forkel, S.; Leha, A.; Alkon, N.; Ruwisch, J.; Lenz, C.; Schön, M. P.; Schmelz, M. et al.; Brunner, P.; Steinhoff, M.; Buhl, T.: Skin microdialysis detects distinct immunologic patterns in chronic inflammatory skin diseases. The Journal of Allergy and Clinical Immunology 154 (6), pp. 1450 - 1461 (2024)

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Hollstein, M. M.; Traidl, S.; Heetfeld, A.; Forkel, S.; Leha, A.; Alkon, N.; Ruwisch, J.; Lenz, C.; Schön, M. P.; Schmelz, M. et al.; Brunner, P.; Steinhoff, M.; Buhl, T.: Skin microdialysis detects distinct immunological patterns in chronic inflammatory skin diseases. The journal of Allergy and Clinical Immunology 154 (6), pp. 1450 - 1461 (2024)

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5.

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Lavdovskaia, E.; Hanitsch, E.; Linden, A.; Pašen, M.; Challa, V.; Horokhovskyi, Y.; Roetschke, H. P.; Nadler, F.; Welp, L.; Steube, E. et al.; Heinrichs, M.; Mai, M. M.-Q.; Urlaub, H.; Liepe, J.; Richter-Dennerlein, R.: A roadmap for ribosome assembly in human mitochondria. Nature Structural & Molecular Biology 31, pp. 1898 - 1908 (2024)

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6.

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Swarnkar, A.; Leidner, F.; Rout, A. K.; Ainatzi, S.; Schmidt, C. C.; Becker, S.; Urlaub, H.; Griesinger, C.; Grubmüller, H.; Stein, A.: Determinants of chemoselectivity in ubiquitination by the J2 family of ubiquitin-conjugating enzymes. The EMBO Journal 43 (24), pp. 6705 - 6739 (2024)

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7.

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Altas, B.; Tuffy, L. P.; Patrizi, A.; Dimova, K.; Soykan, T.; Brandenburg, C.; Romanowski, A. J.; Whitten, J. R.; Robertson, C. D.; Khim, S. N. et al.; Crutcher, G. W.; Ambrozkiewicz, M.; Yagensky, O.; Krüger-Burg, D. D.; Hammer, M.; Hsiao, H.-H.; Laskowski, P. R.; Dyck, L.; Puche, A. C.; Sassoè-Pognetto, M.; Chua, J. J. E.; Urlaub, H.; Jahn, O.; Brose, N.; Poulopoulos, A.: Region-Specific Phosphorylation Determines Neuroligin-3 Localization to Excitatory versus Inhibitory Synapses. Biological Psychiatry 96 (10), pp. 815 - 828 (2024)

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Foo, B.; Amedei, H.; Kaur, S.; Jaawan, S.; Boshnakovska, A.; Gall, T.; de Boer, R. A.; Silljé, H. H. W.; Urlaub, H.; Rehling, P. et al.; Lenz, C.; Lehnart, S. E.: Unbiased complexome profiling and global proteomics analysis reveals mitochondrial impairment and potential changes at the intercalated disk in presymptomatic R14^Δ/+ mice hearts. PLOS ONE 19 (10), e0311203 (2024)

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9.

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Reshetniak, S.; Bogaciu, C. A.; Bonn, S.; Brose, N.; Cooper, B. H.; D'Este, E.; Fauth, M.; Fernández‐Busnadiego, R.; Fiosins, M.; Fischer, A. et al.; Georgiev, S. V.; Jakobs, S.; Klumpp, S.; Köster, S.; Lange, F.; Lipstein, N.; Macarrón‐Palacios, V.; Milovanovic, D.; Moser, T.; Müller, M.; Opazo, F.; Outeiro, T. F.; Pape, C.; Priesemann, V.; Rehling, P.; Salditt, T.; Schlüter, O.; Simeth, N.; Steinem, C.; Tchumatchenko, T.; Tetzlaff, C.; Tirard, M.; Urlaub, H.; Wichmann, C.; Wolf, F.; Rizzoli, S. O.: The synaptic vesicle cluster as a controller of pre‐ and postsynaptic structure and function. The Journal of Physiology (2024)

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10.

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Fokken, C.; Silbern, I.; Shomroni, O.; Pan, K.-T.; Ryazanov, S.; Leonov, A.; Winkler, N.; Urlaub, H.; Griesinger, C.; Becker, D.: Interfering with aggregated α-synuclein in advanced melanoma leads to a major upregulation of MHC class II proteins. Melanoma Research 34 (5), pp. 393 - 407 (2024)

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11.

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Lahiri, S. K.; Lu, J.; Aguilar-Sanchez, Y.; Li, H.; Moreira, L. M.; Hulsurkar, M. M.; Mendoza, A.; Turkieltaub Paredes, M. R.; Navarro-Garcia, J. A.; Munivez, E. et al.; Horist, B.; Moore, O. M.; Weninger, G.; Brandenburg, S.; Lenz, C.; Lehnart, S. E.; Sayeed, R.; Krasopoulos, G.; Srivastava, V.; Zhang, L.; Karch, J. M.; Reilly, S.; Wehrens, X. H.T.: Targeting calpain-2-mediated junctophilin-2 cleavage delays heart failure progression following myocardial infarction. Journal of Molecular and Cellular Cardiology 194, pp. 85 - 95 (2024)

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12.

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Sailer, A.-L.; Jevtic, Z.; Stoll, B.; Wörtz, J.; Sharma, K.; Urlaub, H.; Dyall-Smith, M.; Pfeiffer, F.; Marchfelder, A.; Lenz, C.: Iron starvation results in up-regulation of a probable Haloferax volcanii siderophore transporter. Frontiers in Microbiology 15, 1422844 (2024)

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13.

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Aich, A.; Boshnakovska, A.; Witte, S.; Gall, T.; Unthan-Fechner, K.; Yousefi, R.; Chowdhury, A.; Dahal, D.; Methi, A.; Kaufmann, S. et al.; Silbern, I.; Prochazka, J.; Nichtova, Z.; Palkova, M.; Raishbrook, M.; Koubkova, G.; Sedlacek, R.; Tröder, S.E.; Zevnik, B.; Riedel, D.; Michanski, S.; Möbius, W.; Ströbel, P.; Lüchtenborg, C.; Giavalisco, P.; Urlaub, H.; Fischer, A.; Brügger, B.; Jakobs, S.; Rehling, P.: Defective mitochondrial COX1 translation due to loss of COX14 function triggers ROS-induced inflammation in mouse liver. Nature Communications 15, 6914 (2024)

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14.

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Amedei, H.; Paul, N. B.; Foo, B.; Neuenroth, L.; Lehnart, S. E.; Urlaub, H.; Lenz, C.: mini-Complexome Profiling (mCP), an FDR-controlled workflow for global targeted detection of protein complexes. Frontiers in Analytical Science 4, 1425190 (2024)

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15.

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Bilger, R.; Migur, A.; Wulf, A.; Steglich, C.; Urlaub, H.; Hess, W. R.: A type III-Dv CRISPR-Cas system is controlled by the transcription factor RpaB and interacts with the DEAD-box RNA helicase CrhR. Cell Reports 43 (7), 114485 (2024)

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16.

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Zhang, Z.; Kumar, V.; Dybkov, O.; Will, C. L.; Zhong, J.; Ludwig, S. E. J.; Urlaub, H.; Kastner, B.; Stark, H.; Lührmann, R.: Structural insights into the cross-exon to cross-intron spliceosome switch. Nature 630, pp. 1012 - 1019 (2024)

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17.

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Harasimov, K.; Gorry, R. L.; Welp, L. M.; Penir, S. M.; Horokhovskyi, Y.; Cheng, S.; Takaoka, K.; Stützer, A.; Frombach, A.-S.; Taylor Tavares, A. L. et al.; Raabe, M.; Haag, S.; Saha, D.; Grewe, K.; Schipper, V.; Rizzoli, S. O.; Urlaub, H.; Liepe, J.; Schuh, M.: The maintenance of oocytes in the mammalian ovary involves extreme protein longevity. Nature Cell Biology 26, pp. 1124 - 1138 (2024)

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18.

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Dreyer, A.; Masanta, W. O.; Lugert, R.; Bohne, W.; Groß, U.; Leha, A.; Dakna, M.; Lenz, C.; Zautner, A. E.: Proteome profiling of Campylobacter jejuni 81–176 at 37 °C and 42 °C by label-free mass spectrometry. BMC Microbiology 24, 191 (2024)

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19.

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Velychko, T.; Mohammad, E.; Ferrer-Vicens, I.; Parfentev, I.; Werner, M.; Studniarek, C.; Schwalb, B.; Urlaub, H.; Murphy, S.; Cramer, P. et al.; Lidschreiber, M.: CDK7 kinase activity promotes RNA polymerase II promoter escape by facilitating initiation factor release. Molecular Cell 84 (12), pp. 2287 - 2303.e10 (2024)

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20.

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James, C.; Möller, U.; Spillner, C.; König, S.; Dybkov, O.; Urlaub, H.; Lenz, C.; Kehlenbach, R. H.: Phosphorylation of ELYS promotes its interaction with VAPB at decondensing chromosomes during mitosis. EMBO Reports 25 (5), pp. 2391 - 2417 (2024)

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21.

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Tarău, D.; Grünberger, F.; Pilsl, M.; Reichelt, R.; Heiß, F.; König, S.; Urlaub, H.; Hausner, W.; Engel, C.; Grohmann, D.: Structural basis of archaeal RNA polymerase transcription elongation and Spt4/5 recruitment. Nucleic Acids Research 52 (10), pp. 6017 - 6035 (2024)

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22.

Journal Article

Fianu, I.; Ochmann, M.; Walshe, J. L.; Dybkov, O.; Cruz, J. N.; Urlaub, H.; Cramer, P.: Structural basis of Integrator-dependent RNA polymerase II termination. Nature 629, pp. 219 - 227 (2024)

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23.

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Corcoran, S. R.; Phelan, J. D.; Choi, J.; Shevchenko, G.; Fenner, R. E.; Yu, X.; Scheich, S.; Hsiao, T.; Morris, V. M.; Papachristou, E. K. et al.; Kishore, K.; D'Santos, C. S.; Ji, Y.; Pittaluga, S.; Wright, G. W.; Urlaub, H.; Pan, K.-T.; Oellerich, T.; Muppidi, J.; Hodson, D. J.; Staudt, L. M.: Molecular Determinants of Sensitivity to Polatuzumab Vedotin in Diffuse Large B Cell Lymphoma. Cancer Discovery 14 (9), pp. 1653 - 1674 (2024)

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24.

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Zhuang, X.; Woods, J.; Ji, Y.; Scheich, S.; Mo, F.; Rajagopalan, S.; Coulibaly, Z. A.; Voss, M.; Urlaub, H.; Staudt, L. M. et al.; Pan, K.-T.; Long, E. O.: Functional genomics identifies N-acetyllactosamine extension of complex N-glycans as a mechanism to evade lysis by natural killer cells. Cell Reports 43 (4), 114105 (2024)

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25.

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Atkinson, R.; Georgiou, M.; Yang, C.; Szymanska, K.; Lahat, A.; Vasconcelos, E.J.R.; Ji, Y.; Moya Molina, M.; Collin, J.; Queen, R. et al.; Dorgau, B.; Watson, A.; Kurzawa-Akanbi, M.; Laws, R.; Saxena, A.; Shyan Beh, C.; Siachisumo, C.; Goertler, F.; Karwatka, M.; Davey, T.; Inglehearn, C.F.; McKibbin, M.; Lührmann, R.; Steel, D.H.; Elliott, D.J.; Armstrong, L.; Urlaub, H.; Ali, R.R.; Grellscheid, S.-N.; Johnson, C.A.; Mozaffari-Jovin, S.; Lako, M.: PRPF8-mediated dysregulation of hBrr2 helicase disrupts human spliceosome kinetics and 5´-splice-site selection causing tissue-specific defects. Nature Communications 15, 3138 (2024)

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26.

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Dreyer, A.; Lenz, C.; Gross, U.; Bohne, W.; Zautner, A. E.: Comparative analysis of proteomic adaptations in Enterococcus faecalis and Enterococcus faecium after long term bile acid exposure. BMC Microbiology 24 (1), 110 (2024)

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27.

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Siraj, A.; Bouwmeester, R.; Declercq, A.; Welp, L.; Chernev, A.; Wulf, A.; Urlaub, H.; Martens, L.; Degroeve, S.; Kohlbacher, O. et al.; Sachsenberg, T.: Intensity and retention time prediction improves the rescoring of protein‐nucleic acid cross‐links. Proteomics 24 (8), 2300144 (2024)

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28.

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Xu, M.; Ito-Kureha, T.; Kang, H.-S.; Chernev, A.; Raj, T.; Hoefig, K. P.; Hohn, C.; Giesert, F.; Wang, Y.; Pan, W. et al.; Ziętara, N.; Straub, T.; Feederle, R.; Daniel, C.; Adler, B.; König, J.; Feske, S.; Tsokos, G. C.; Wurst, W.; Urlaub, H.; Sattler, M.; Kisielow, J.; Wulczyn, F. G.; Łyszkiewicz, M.; Heissmeyer, V.: The thymocyte-specific RNA-binding protein Arpp21 provides TCR repertoire diversity by binding to the 3’-UTR and promoting Rag1 mRNA expression. Nature Communications 15, 2194 (2024)

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29.

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Kokic, G.; Yakoub, G.; van den Heuvel, D.; Wondergem, A. P.; van der Meer, P. J.; van der Weegen, Y.; Chernev, A.; Fianu, I.; Fokkens, T. J.; Lorenz, S. et al.; Urlaub, H.; Cramer, P.; Luijsterburg, M. S.: Structural basis for RNA polymerase II ubiquitylation and inactivation in transcription-coupled repair. Nature Structural & Molecular Biology 31, pp. 536 - 547 (2024)

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30.

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Kanwal, N.; Krogh, N.; Memet, I.; Lemus-Diaz, N.; Thomé, C. C.; Welp, L. M.; Mizi, A.; Hackert, P.; Papantonis, A.; Urlaub, H. et al.; Nielsen, H.; Bohnsack, K. E.; Bohnsack, M. T.: GPATCH4 regulates rRNA and snRNA 2′-O-methylation in both DHX15-dependent and DHX15-independent manners. Nucleic Acids Research 52 (4), pp. 1953 - 1974 (2024)

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31.

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Zhang, Z.; Kumar, V.; Dybkov, O.; Will, C. L.; Urlaub, H.; Stark, H.; Lührmann, R.: Cryo-EM analyses of dimerized spliceosomes provide new insights into the functions of B complex proteins. The EMBO Journal 43, pp. 1065 - 1088 (2024)

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32.

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Phelan, J. D.; Scheich, S.; Choi, J.; Wright, G. W.; Häupl, B.; Young, R. M.; Rieke, S. A.; Pape, M.; Ji, Y.; Urlaub, H. et al.; Bolomsky, A.; Doebele, C.; Zindel, A.; Wotapek, T.; Kasbekar, M.; Collinge, B.; Huang, D. W.; Coulibaly, Z. A.; Morris, V. M.; Zhuang, X.; Enssle, J. C.; Yu, X.; Xu, W.; Yang, Y.; Zhao, H.; Wang, Z.; Tran, A. D.; Shoemaker, C. J.; Shevchenko, G.; Hodson, D. J.; Shaffer, A. L.; Staudt, L. M.; Oellerich, T.: Response to Bruton’s tyrosine kinase inhibitors in aggressive lymphomas linked to chronic selective autophagy. Cancer Cell 42 (2), pp. 238 - 252.e9 (2024)

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33.

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Düring, J.; Wolter, M.; Toplak, J. J.; Torres, C.; Dybkov, O.; Fokkens, T. J.; Bohnsack, K. E.; Urlaub, H.; Steinchen, W.; Dienemann, C. et al.; Lorenz, S.: Structural mechanisms of autoinhibition and substrate recognition by the ubiquitin ligase HACE1. Nature Structural & Molecular Biology 31, pp. 364 - 377 (2024)

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34.

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Soh, W. T.; Roetschke, H. P.; Cormican, J. A.; Teo, B.F.; Chiam, N. C.; Raabe, M.; Pflanz, R.; Henneberg, F.; Becker, S.; Chari, A. et al.; Liu, H.; Urlaub, H.; Liepe, J.; Mishto, M.: Protein degradation by human 20S proteasomes elucidates the interplay between peptide hydrolysis and splicing. Nature Communications 15 (1), 1147 (2024)

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35.

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Carmona, A.; Carboni, E.; Gomes, L.C.; Roudeau, S.; Maass, F.; Lenz, C.; Ortega, R.; Lingor, P.: Metal dyshomeostasis in the substantia nigra of patients with Parkinson's disease or multiple sclerosis. Journal of Neurochemistry 168 (2), pp. 128 - 141 (2024)

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36.

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Cepeda, A. P.; Ninov, M.; Neef, J.; Parfentev, I.; Kusch, K.; Reisinger, E.; Jahn, R.; Moser, T.; Urlaub, H.: Proteomic Analysis Reveals the Composition of Glutamatergic Organelles of Auditory Inner Hair Cells. Molecular & Cellular Proteomics 23 (2), 100704 (2024)

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37.

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Altas, B.; Rhee, H. J.; Ju, A.; Solis, H. C.; Karaca, S.; Winchenbach, J.; Kaplan-Arabaci, O.; Schwark, M.; Ambrozkiewicz, M.; Lee, C. et al.; Spieth, L.; Wieser, G. L.; Chaugule, V. K.; Majoul, I.; Hassan, M. A.; Goel, R.; Wojcik, S. M.; Koganezawa, N.; Hanamura, K.; Rotin, D.; Pichler, A.; Mitkovski, M.; de Hoz, L.; Poulopoulos, A.; Urlaub, H.; Jahn, O.; Saher, G.; Brose, N.; Rhee, J.; Kawabe, H.: Nedd4-2-dependent regulation of astrocytic Kir4.1 and Connexin43 controls neuronal network activity. Journal of Cell Biology 223 (1), e201902050 (2024)

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38.

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Binotti, B.; Ninov, M.; Cepeda, A. P.; Ganzella, M.; Matti, U.; Riedel, D.; Urlaub, H.; Sambandan, S.; Jahn, R.: ATG9 resides on a unique population of small vesicles in presynaptic nerve terminals. Autophagy 20 (4), pp. 883 - 901 (2024)

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39.

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Egbert, J. R.; Silbern, I.; Uliasz, T. F.; Lowther, K. M.; Yee, S.-P.; Urlaub, H.; Jaffe, L. A.: Phosphatases modified by LH signaling in ovarian follicles: testing their role in regulating the NPR2 guanylyl cyclase. Biology of Reproduction 110 (1), pp. 102 - 115 (2024)

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40.

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Paulke, N. J.; Fleischhacker, C.; Wegener, J. B.; Riedemann, G. C.; Cretu, C.; Mushtaq, M.; Zaremba, N.; Möbius, W.; Zühlke, Y.; Wedemeyer, J. et al.; Liebmann, L.; Gorshkova, A. A.; Kownatzki-Danger, D.; Wagner, E.; Kohl, T.; Wichmann, C.; Jahn, O.; Urlaub, H.; Toischer, K.; Hasenfuß, G.; Moser, T.; Preobraschenski, J.; Lenz, C.; Rog-Zielinska, E. A.; Lehnart, S. E.; Brandenburg, S.: Dysferlin Enables Tubular Membrane Proliferation in Cardiac Hypertrophy. Circulation Research 135 (5), pp. 554 - 574 (2024)

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41.

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Prusty, A.B.; Hirmer, A.; Sierra-Delgado, J.A.; Huber, H.; Guenther, U.-P.; Schlosser, A.; Dybkov, O.; Yildirim, E.; Urlaub, H.; Meyer, K.C. et al.; Jablonka, S.; Erhard, F.; Fischer, U.: RNA helicase IGHMBP2 regulates THO complex to ensure cellular mRNA homeostasis. Cell Reports 43 (2), 113802 (2024)

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42.

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Wicke, D.; Neumann, P.; Goessringer, M.; Chernev, A.; Davydov, S.; Poehlein, A.; Daniel, R.; Urlaub, H.; Hartmann, R. K.; Ficner, R. et al.; Stuelke, J.: The previously uncharacterized RnpM (YlxR) protein modulates the activity of ribonuclease P in Bacillus subtilis in vitro. Nucleic Acids Research 52 (3), pp. 1404 - 1409 (2023)

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43.

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Jentoft, I. M. A.; Bäuerlein, F. J.B.; Welp, L. M.; Cooper, B. H.; Petrovic, A.; So, C.; Penir, S. M.; Politi, A. Z.; Horokhovskyi, Y.; Takala, I. et al.; Eckel, H.; Moltrecht, R.; Lenart, P.; Cavazza, T.; Liepe, J.; Brose, N.; Urlaub, H.; Fernández-Busnadiego, R.; Schuh, M.: Mammalian oocytes store proteins for the early embryo on cytoplasmic lattices. Cell 186 (24), pp. 5308 - 5327.e25 (2023)

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44.

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Dreyer, A.; Lenz, C.; Groß, U.; Bohne, W.; Zautner, A.E.: Characterization of Campylobacter jejuni proteome profiles in co-incubation scenarios. Frontiers in Microbiology 14, 1247211 (2023)

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45.

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Saxena, K.; Roverato, N. D.; Reithmann, M.; Mah, M. M.; Schregle, R.; Schmidtke, G.; Silbern, I.; Urlaub, H.; Aichem, A.: FAT10 is phosphorylated by IKKβ to inhibit the antiviral type-I interferon response. Life science alliance 7 (1), e202101282 (2023)

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46.

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Chen, Y.; Kokic, G.; Dienemann, C.; Dybkov, O.; Urlaub, H.; Cramer, P.: Structure of the transcribing RNA polymerase II–Elongin complex. Nature Structural & Molecular Biology 30, pp. 1925 - 1935 (2023)

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47.

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Grünberger, F.; Schmid, G.; El Ahmad, Z.; Fenk, M.; Vogl, K.; Reichelt, R.; Hausner, W.; Urlaub, H.; Lenz, C.; Grohmann, D.: Uncovering the temporal dynamics and regulatory networks of thermal stress response in a hyperthermophile using transcriptomics and proteomics. mBio 14 (6), e02174-23 (2023)

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48.

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Alfaro, A. J.; Dittner, C.; Becker, J.; Loft, A.; Mhamane, A.; Maida, A.; Georgiadi, A.; Tsokanos, F.-F.; Klepac, K.; Molocea, C.-E. et al.; El-Merahbi, R.; Motzler, K.; Geppert, J.; Karikari, R. A.; Szendroedi, J.; Feuchtinger, A.; Hofmann, S.; Karaca, S.; Urlaub, H.; Berriel Diaz, M.; Melchior, F.; Herzig, S.: Fasting-sensitive SUMO-switch on Prox1 controls hepatic cholesterol metabolism. EMBO Reports 24 (10), e55981| (2023)

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49.

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Chowdhury, A.; Boshnakovska, A.; Aich, A.; Methi, A.; Vergel Leon, A. M.; Silbern, I.; Lüchtenborg, C.; Cyganek, L.; Prochazka, J.; Sedlacek, R. et al.; Lindovsky, J.; Wachs, D.; Nichtova, Z.; Zudova, D.; Koubkova, G.; Fischer, A.; Urlaub, H.; Brügger, B.; Katschinski, D. M.; Dudek, J.; Rehling, P.: Metabolic switch from fatty acid oxidation to glycolysis in knock-in mouse model of Barth syndrome. Embo Molecular Medicine 15 (9), e17399 (2023)

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50.

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Grahn, E.; Kaufmann, S. V.; Askarova, M.; Ninov, M.; Welp, L. M.; Berger, T.K.; Urlaub, H.; Kaupp, U.B.: Control of intracellular pH and bicarbonate by CO₂ diffusion into human sperm. Nature Communications 14, 5395 (2023)

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