Publications

Max Planck Institute for Multidisciplinary Sciences

Journal Article (505)

401.

Journal Article

Kühn-Hölsken, E.; Lenz, C.; Dickmanns, A.; Hsiao, H. H.; Richter, F. M.; Kastner, B.; Ficner, R.; Urlaub, H.: Mapping the binding site of snurportin 1 on native U1 snRNP by cross-linking and mass spectrometry. Nucleic Acids Research 38 (16), pp. 5581 - 5593 (2010)

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402.

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Schneider, M.; Will, C. L.; Anokhina, M.; Tazi, J.; Urlaub, H.; Lührmann, R.: Exon definition complexes contain the tri-snRNP and can be directly converted into B-like precatalytic splicing complexes. Molecular Cell 38 (2), pp. 223 - 235 (2010)

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403.

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Geoui, T.; Urlaub, H.; Plessmann, U.; Porschewski, P.: Extraction of proteins from formalin-fixed, paraffin-embedded tissue using the Qproteome extraction technique and preparation of tryptic peptides for liquid chromatography/mass spectrometry analysis. Current Protocols in Molecular Biology 90 (Unit 10.27), DOI: 10.1002/0471142727.mb1027s90 (2010)

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404.

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Jae, N.; Wang, P.; Gu, T.; Huehn, M.; Palfi, Z.; Urlaub, H.; Bindereif, A.: Essential role of a trypanosome U4-specific Sm core protein in small nuclear ribonucleoprotein assembly and splicing. Eukaryotic Cell 9 (3), pp. 379 - 386 (2010)

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405.

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Owald, D.; Fouquet, W.; Schmidt, M.; Wichmann, C.; Mertel, S.; Depner, H.; Christiansen, F.; Zube, C.; Quentin, C.; Koerner, J. et al.; Urlaub, H.; Mechtler, K.; Sigrist, S. J.: A Syd-1 homologue regulates pre- and postsynaptic maturation in Drosophila. The Journal of Cell Biology 188 (4), pp. 565 - 579 (2010)

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406.

Journal Article

Marcus, K.; Schmidt, C.; Urlaub, H.: Proteomic basics — quantification and post-translational modifications of proteins: The 3rd European Summer School in Kloster Neustift. Journal of Proteomics 73 (4), pp. 697 - 700 (2010)

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407.

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Schneider, M.; Hsiao, H. H.; Will, C. L.; Giet, R.; Urlaub, H.; Lührmann, R.: Human PRP4 kinase is required for stable tri-snRNP association during spliceosomal B complex formation. Nature Structural and Molecular Biology 17 (2), pp. 216 - 222 (2010)

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408.

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Schulz, E. C.; Dickmanns, A.; Urlaub, H.; Schmitt, A.; Muehlenhoff, M.; Stummeyer, K.; Schwarzer, D.; Gerardy-Schahn, R.; Ficner, R.: Crystal structure of an intramolecular chaperone mediating triple–β-helix folding. Nature Structural and Molecular Biology 17 (2), pp. 210 - 215 (2010)

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409.

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Groenborg, M.; Pavlos, N. J.; Brunk, I.; Chua, J.; Muenster-Wandowski, A.; Riedel, D.; Ahnert-Hilger, G.; Urlaub, H.; Jahn, R.: Quantitative comparison of glutamatergic and GABAergic synaptic vesicles unveils selectivity for few proteins including MAL2, a novel synaptic vesicle protein. Journal of Neuroscience 30 (1), pp. 2 - 12 (2010)

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supplementary-material

410.

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Richter, F. M.; Sander, B.; Golas, M. M.; Stark, H.; Urlaub, H.: Merging molecular electron microscopy and mass spectrometry by carbon film-assisted endoproteinase digestion. Molecular and Cellular Proteomics 9, pp. 1729 - 1741 (2010)

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411.

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Schmidt, C.; Lenz, C.; Grote, M.; Lührmann, R.; Urlaub, H.: Determination of protein stoichiometry within protein complexes using absolute quantification and multiple reaction monitoring. Analytical Chemistry 82 (7), pp. 2784 - 2796 (2010)

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412.

Journal Article

Franz, H.; Mosch, K.; Soeroes, S.; Urlaub, H.; Fischle, W.: Multimerization and H3K9me3 binding is required for CDYL1b heterochromatin association. Journal of Biological Chemistry 284 (50), pp. 35049 - 35059 (2009)

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413.

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Warkocki, Z.; Odenwälder, P.; Schmitzova, J.; Platzmann, F.; Stark, H.; Urlaub, H.; Ficner, R.; Fabrizio, P.; Lührmann, R.: Reconstitution of both steps of S. cerevisiae splicing with purified spliceosomal components. Nature Structural and Molecular Biology 16 (12), pp. 1237 - 1243 (2009)

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414.

Journal Article

Neumann, K.; Oellerich, T.; Urlaub, H.; Wienands, J.: The B-lymphoid Grb2 interaction code. Immunological Reviews 232 (1), pp. 135 - 149 (2009)

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415.

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Galli, S.; Jahn, O.; Hitt, R.; Hesse, D.; Opitz, L.; Plessmann, U.; Urlaub, H.; Poderoso, J. J.; Jares-Erijman, E. A.; Jovin, T. M.: A new paradigm for MAPK: Structural interactions of hERK1 with mitochondria in HeLa cells. PLoS One 4 (10), e7541 (2009)

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416.

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Geiss-Friedlander, R.; Parmentier, N.; Moeller, U.; Urlaub, H.; Van den Eynde, B. J.; Melchior, F.: The cytoplasmic peptidase DPP9 is rate-limiting for degradation of proline-containing peptides. Journal of Biological Chemistry 284 (40), pp. 27211 - 27219 (2009)

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417.

Journal Article

Said, N.; Rieder, R.; Hurwitz, R.; Deckert, J.; Urlaub, H.; Vogel, J.: In vivo expression and purification of aptamer-tagged small RNA regulators. Nucleic Acids Research 37 (20), e133 (2009)

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418.

Journal Article

Lakomek, K.; Dickmanns, A.; Kettwig, M.; Urlaub, H.; Ficner, R.; Lübke, T.: Initial insight into the function of the lysosomal 66.3 kDa protein from mouse by means of X-ray crystallography. BMC Structural Biology 9, 56 (2009)

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419.

Journal Article

Hsiao, H. H.; Meulmeester, E.; Frank, B. T. C.; Melchior, F.; Urlaub, H.: "ChopNspice", a mass-spectrometric approach that allows identification of endogenous SUMO-conjugated peptides. Mollecular and Cellular Proteomics 8, pp. 2664 - 2675 (2009)

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420.

Journal Article

Palfi, Z.; Jaé, N.; Preusser, C.; Kaminska, K. H.; Bujnicki, J. M.; Lee, J. H.; Guenzl, A.; Kambach, C.; Urlaub, H.; Bindereif, A.: SMN-assisted assembly of snRNP-specific Sm cores in trypanosomes. Genes and Development 23 (14), pp. 1650 - 1664 (2009)

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421.

Journal Article

Oellerich, T.; Grønborg, M.; Neumann, K.; Hsiao, H. H.; Urlaub, H.; Wienands, J.: SLP-65 phosphorylation dynamics reveals a functional basis for signal integration by receptor-proximal adaptor proteins. Molecular and Cellular Proteomics 8 (7), pp. 1738 - 1750 (2009)

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supplementary-material

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422.

Journal Article

Richter, F.; Hsiao, H. H.; Plessmann, U.; Urlaub, H.: Enrichment of protein-RNA crosslinks from crude UV-irradiated mixtures for MS analysis by on-line chromatography using titanium dioxide columns. Biopolymers 91 (4), pp. 297 - 309 (2009)

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423.

Journal Article

Pal, A.; Kraetzner, R.; Gruene, T.; Grapp, M.; Schreiber, K.; Groenborg, M.; Urlaub, H.; Becker, S.; Asif, A. R.; Gaertner, J. et al.; Sheldrick, G. M.; Steinfeld, R.: Structure of tripeptidyl-peptidase I provides insight into the molecular basis of late infantile neuronal ceroid lipofuscinosis. Journal of Biological Chemistry 284 (6), pp. 3976 - 3984 (2009)

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424.

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Weinmann, L.; Hoeck, J.; Ivacevic, T.; Ohrt, T.; Muetze, J.; Schwille, P.; Kremmer, E.; Benes, V.; Urlaub, H.; Meister, G.: Importin 8 is a gene silencing factor that targets argonaute proteins to distinct mRNAs. Cell 136 (3), pp. 496 - 507 (2009)

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425.

Journal Article

Ons, S.; Richter, F.; Urlaub, H.; Rivera Pomar, R.: The neuropeptidome of Rhodnius prolixus brain. Proteomics 9 (3), pp. 788 - 792 (2009)

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426.

Journal Article

Matyash, A.; Singh, S.; Hanes, S. D.; Urlaub, H.; Jäckle, H.: SAP18 promotes Krüppel-dependent transcriptional repression by enhancer-specific histone deacetylation. Journal of Biological Chemistry 284 (5), pp. 3012 - 3020 (2009)

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427.

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Fabrizio, P.; Dannenberg, J.; Dube, P.; Kastner, B.; Stark, H.; Urlaub, H.; Lührmann, R.: The evolutionarily conserved core design of the catalytic activation step of the yeast spliceosome. Molecular Cell 36 (4), pp. 593 - 608 (2009)

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428.

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Herold, N.; Will, C. L.; Wolf, E.; Kastner, B.; Urlaub, H.; Lührmann, R.: Conservation of the protein composition and electron microscopy structure of Drosophila melanogaster and human spliceosomal complexes. Molecular and Cellular Biology 29 (1), pp. 281 - 301 (2009)

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429.

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Kuhn, A. N.; van Santen, M. A.; Schwienhorst, A.; Urlaub, H.; Lührmann, R.: Stalling of spliceosome assembly at distinct stages by small-molecule inhibitors of protein acetylation and deacetylation. RNA 15 (1), pp. 153 - 175 (2009)

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430.

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Rapp, E.; Charvat, A.; Beinsen, A.; Plessmann, U.; Reichl, U.; Seidel-Morgenstern, A.; Urlaub, H.; Abel, B.: Atmospheric pressure free liquid infrared MALDI mass spectrometry: toward a combined ESI/MALDI-liquid chromatography interface. Analytical Chemistry 81 (1), pp. 443 - 452 (2009)

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431.

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Urlaub, H.; Groenborg, M.; Jahn, R.: Synaptische Vesikel als Modell. Biospektrum 15 (1), pp. 16 - 19 (2009)

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432.

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Luo, X.; Hsiao, H. H.; Bubunenko, M.; Weber, D.; Court, D. L.; Gottesmann, M. E.; Urlaub, H.; Wahl, M. C.: Structural and functional analysis of the E. coli NusB-S10 transcription antitermination complex. Molecular Cell 32 (6), pp. 791 - 802 (2008)

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433.

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Meulmeester, E.; Kunze, M.; Hsiao, H. H.; Urlaub, H.; Melchior, F.: Mechanism and consequences for paralog-specific sumoylation of ubiquitin-specific protease 25. Molecular Cell 30 (5), pp. 610 - 619 (2008)

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434.

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Mathew, R.; Hartmuth, K.; Moehlmann, S.; Urlaub, H.; Ficner, R.; Luehrmann, R.: Phosphorylation of human PRP28 by SRPK2 is required for integration of the U4/U6-U5 tri-snRNP into the spliceosome. Nature Structural & Molecular Biology 15 (5), pp. 435 - 443 (2008)

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435.

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Mukherjee, K.; Sharma, M.; Urlaub, H.; Bourenkov, G. P.; Jahn, R.; Suedhof, T. C.; Wahl, M. C.: CASK functions as a Mg²⁺-independent neurexin kinase. Cell 133 (2), pp. 328 - 339 (2008)

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436.

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Bessonov, S.; Anokhina, M.; Will, C. L.; Urlaub, H.; Luehrmann, R.: Isolation of an active step I spliceosome and composition of its RNP core. Nature 452 (7189), pp. 846 - 850 (2008)

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437.

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Martin, N.; Schwamborn, K.; Urlaub, H.; Gan, B.; Guan, J. L.; Dejean, A.: Spatial interplay between PIASy and FIP200 in the regulation of signal transduction and transcriptional activity. Molecular and Cellular Biology 28 (8), pp. 2771 - 2781 (2008)

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438.

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Marcus, K.; Kuehn-Hoelsken, E.; Schmidt, C.; Schulenborg, T.; Urlaub, H.: 'Proteomic basics-sample preparation and separation': the 1st european summer school in Kloster Neustift 12-18 August, 2007 Brixen/Bressanone, South Tyrol, Italy. PROTEOMICS 8 (2), pp. 230 - 233 (2008)

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439.

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Martin, N.; Schwamborn, K.; Urlaub, H.; Gan, B.; Guan, J. L.; Dejean, A.: Spatial interplay between PIASy and FIP200 in the regulation of signal transduction and transcriptional activity. Molecular and Cellular Biology 28 (8), pp. 2771 - 2781 (2008)

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440.

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Matthes, A.; Schmidt-Gattung, S.; Koehler, D.; Forner, J.; Wildum, S.; Raabe, M.; Urlaub, H.; Binder, S.: Two DEAD-box proteins may be part of RNA-dependent high-molecular-mass protein complexes in Arabidopsis mitochondria. Plant Physiology 145 (4), pp. 1637 - 1646 (2007)

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441.

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Kuehn-Hoelsken, E.; Dybkov, O.; Sander, B.; Luehrmann, R.; Urlaub, H.: Improved identification of enriched peptide–RNA cross-links from ribonucleoprotein particles (RNPs) by mass spectrometry. Nucleic Acids Research 35 (15), e95 (2007)

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442.

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Li, X.; Kim, J. W.; Groenborg, M.; Urlaub, H.; Lane, M. D.; Tang, Q. Q.: Role of cdk2 in the sequential phosphorylation/activation of C/EBP^β during adipocyte differentiation. Proceedings of the National Academy of Sciences USA 104 (28), pp. 11597 - 11602 (2007)

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443.

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Takenaka, M.; Verbitskiy, D.; van der Merwe, J. A.; Zehrmann, A.; Plessmann, U.; Urlaub, H.; Brennicke, A.: In vitro RNA editing in plant mitochondria does not require added energy. FEBS Letters 581 (14), pp. 2743 - 2747 (2007)

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444.

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Lenz, C.; Kuehn-Hoelsken, E.; Urlaub, H.: Detection of protein-RNA crosslinks by nanoLC-ESI-MS/MS using precursor ion scanning and multiple reaction monitoring (MRM) experiments. Journal of the American Society for Mass Spectrometry 18 (5), pp. 869 - 881 (2007)

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445.

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Behzadnia, N.; Golas, M. M.; Hartmuth, K.; Sander, B.; Kastner, B.; Deckert, J.; Dube, P.; Will, C. L.; Urlaub, H.; Stark, H. et al.; Luehrmann, R.: Composition and three-dimensional EM structure of double affinity-purified, human prespliceosomal A complexes. The EMBO Journal 26 (6), pp. 1737 - 1748 (2007)

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446.

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Hoeck, J.; Weinmann, L.; Ender, C.; Rudel, S.; Kremmer, E.; Raabe, M.; Urlaub, H.; Meister, G.: Proteomic and functional analysis of Argonaute-containing mRNA–protein complexes in human cells. EMBO Reports 8 (11), pp. 1052 - 1060 (2007)

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447.

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Kumar, P.; Bischof, O.; Purbey, P. K.; Notani, D.; Urlaub, H.; Dejean, A.; Galande, S.: Functional interaction between PML and SATB1 regulates chromatin-loop architecture and transcription of the MHC class I locus. Nature Cell Biology 9 (1), pp. 45 - 56 (2007)

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448.

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Merz, C.; Urlaub, H.; Will, C. L.; Luehrmann, R.: Protein composition of human mRNPs spliced in vitro and differential requirements for mRNP protein recruitment. RNA 13, pp. 116 - 128 (2007)

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449.

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Takamori, S.; Holt, M.; Stenius, K.; Lemke, E.; Groenborg, M.; Riedel, D.; Urlaub, H.; Schenck, S.; Bruegger, B.; Ringler, P. et al.; Mueller, S.; Rammner, B.; Graeter, F.; Hub, J. S.; de Groot, B. L.; Mieskes, G.; Moriyama, Y.; Klingauf, J.; Grubmueller, H.; Heuser, J.; Wieland, F.; Jahn, R.: Molecular anatomy of a trafficking organelle. Cell 127 (4), pp. 831 - 846 (2006)

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450.

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Georg, J.; Schomacher, L.; Chong, J. P. J.; Majernik, A. I.; Raabe, M.; Urlaub, H.; Muller, S.; Ciirdaeva, E.; Kramer, W.; Fritz, H. J.: The Methanothermobacter thermautotrophicus ExoIII homologue Mth212 is a DNA uridine endonuclease. Nucleic Acids Research 34 (18), pp. 5325 - 5336 (2006)

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