Cramer, P.; Baumeister, W.: Macromolecular assemblages — from molecules to functional modules. Current Opinion in Structural Biology 15 (2), pp. 185 - 187 (2005)

Armache, K. J.; Mitterweger, S.; Meinhart, A.; Cramer, P.: Structures of complete RNA polymerase II and its subcomplex, Rpb4/7. The Journal of Biological Chemistry 280 (8), pp. 7131 - 7134 (2005)

Cramer, P.; Strässer, K.; Niessing, D.; Meister, G.; Jansen, R. P.: RNA als Koordinator und Regulator der Genexpression. BIOspektrum 11 (Sonderh.), pp. 523 - 525 (2005)

Kettenberger, H.; Eisenführ, A.; Brückner, F.; Theis, M.; Famulok, M.; Cramer, P.: Structure of an RNA polymerase II–RNA inhibitor complex elucidates transcription regulation by noncoding RNAs. Nature Structural and Molecular Biology 13 (1), pp. 44 - 48 (2005)

Kettenberger, H.; Armache, K. J.; Cramer, P.: Complete RNA polymerase II elongation complex structure and its interactions with NTP and TFIIS. Molecular Cell 16 (6), pp. 955 - 965 (2004)

Kamenski, T.; Heilmeier, S.; Meinhart, A.; Cramer, P.: Structure and mechanism of RNA polymerase IICTD phosphatases. Molecular Cell 15 (3), pp. 399 - 407 (2004)

Meinhart, A.; Cramer, P.: Recognition of RNA polymerase II carboxy-terminal domain by 3'-RNA-processing factors. Nature 430 (6996), pp. 223 - 226 (2004)

Cramer, P.: RNA polymerase II structure: From core to functional complexes. Opinion in Geneticsand Development 14 (2), pp. 218 - 226 (2004)

Cikala, M.; Alexandrova, O.; David, C. N.; Pröschel, M.; Stiening, B.; Cramer, P.; Böttger, A.: The phosphatidylserine receptor from Hydra is a nuclear protein with potential Fe(II) dependent oxygenase activity. BMC Cell Biology 5, 26 (2004)

Cramer, P.: Structure and function of RNA polymerase II. Advances in Protein Chemistry 67, pp. 1 - 42 (2004)

Lipps, G.; Weinzierl, A. O.; von Scheven, G.; Buchen, C.; Cramer, P.: Structure of a bifunctional DNA primase-polymerase. Nature Structural and Molecular Biology 11 (2), pp. 157 - 162 (2004)

Meinhart, A.; Blobel, J.; Cramer, P.: An extended winged helix domain in general transcription factor E/IIEα. The Journal of Biological Chemistry 278 (48), pp. 48267 - 48274 (2003)

Kettenberger, H.; Armache, K. J.; Cramer, P.: Architecture of the RNA polymerase II-TFIIS complex and implications for mRNA cleavage. Cell 114 (3), pp. 347 - 357 (2003)

Armache, K. J.; Kettenberger, H.; Cramer, P.: Architecture of initiation-competent 12-subunit RNA polymerase II. Proceedings of the National Academy of Sciences of the USA 100 (12), pp. 6964 - 6968 (2003)

Meinhart, A.; Silberzahn, T.; Cramer, P.: The mRNA transcription/processing factor Ssu72 Is a potential tyrosine phosphatase. Journal of Biological Chemistry 278 (18), pp. 15917 - 15921 (2003)

Cramer, P.: Common structural features of nucleic acid polymerases. Bioessays 24 (8), pp. 724 - 729 (2002)

Bushnell, D. A.; Cramer, P.; Kornberg, R. D.: Structural basis of transcription: α-Amanitin–RNA polymerase II cocrystal at 2.8 Å resolution. Proceedings of the National Academy of Sciences of the USA 99 (3), pp. 1218 - 1222 (2002)

Michel, F.; Soler‐Lopez, M.; Petosa, C.; Cramer, P.; Siebenlist, U.; Müller, C. W.: Crystal structure of the ankyrin repeat domain of Bcl‐3: a unique member of the IκB protein family. EMBO Journal 20 (22), pp. 6180 - 6190 (2001)

Gnatt, A. L.; Cramer, P.; Fu, J.; Bushnell, D. A.; Kornberg, R. D.: Structural basis of transcription: An RNA polymerase II elongation complex at 3.3 Å resolution. Science 292 (5523), pp. 1876 - 1882 (2001)

Cramer, P.; Bushnell, D. A.; Kornberg, R. D.: Structural basis of transcription: RNA polymerase II at 2.8 Ångstrom resolution. Science 292 (5523), pp. 1863 - 1876 (2001)

Bushnell, D. A.; Cramer, P.; Kornberg, R. D.: Selenomethionine incorporation in Saccharomyces cerevisiae RNA polymerase II. Structure 9 (1), pp. R11 - R14 (2001)

Cramer, P.; Bushnell, D. A.; Fu, J.; Gnatt, A. L.; Maier-Davis, B.; Thompson, N. E.; Burgess, R. R.; Edwards, A. M.; David, P. R.; Kornberg, R. D.: Architecture of RNA polymerase II and implications for the transcription mechanism. Science 288 (5466), pp. 640 - 649 (2000)

Cramer, P.; Varrot, A.; Barillas-Mury, C.; Kafatos, F. C.; Müller, C. W.: Structure of the specificity domain of the Dorsal homologue Gambif1 bound to DNA. Structure 7 (7), pp. 841 - 852 (1999)

Cramer, P.; Müller, C. W.: A firm hand on NFκB: structures of the IκBα–NFκB complex. Structure 7 (1), pp. R1 - R6 (1999)

Cramer, P.; Larson, C. J.; Verdine, G. L.; Müller, C. W.: Structure of the human NF‐κB p52 homodimer‐DNA complex at 2.1 Å resolution. EMBO Journal 16 (23), pp. 7078 - 7090 (1997)

Cramer, P.; Müller, C. W.: Engineering of diffraction-quality crystals of the NF-KB P52 homodimer:DNA complex. FEBS Letters 405 (3), pp. 373 - 377 (1997)

Buckle, A. M.; Cramer, P.; Fersht, A. R.: Structural and energetic responses to cavity-creating mutations in hydrophobic cores:  Observation of a buried water molecule and the hydrophilic nature of such hydrophobic cavities. Biochemistry 35 (14), pp. 4298 - 4305 (1996)

Bergamini, P.; Costa, E.; Cramer, P.; Hogg, J.; Orpen, A. G.; Pringle, P. G.: Diastereoselective C-C bond formation by carbene insertions into Pt-CH3 bonds. Organometallics 13 (4), pp. 1058 - 1060 (1994)

Oberbeckmann, E.; Wolff, M. R.; Krietenstein, N.; Heron, M.; Schmid, A.; Straub, T.; Gerland, U.; Korber, P.: ORE-Seq: Genome-Wide Absolute Occupancy Measurement by Restriction Enzyme Accessibilities. In: Chromatin Accessibility: Methods and Protocols, pp. 121 - 152 (Eds. Marinov, G. K.; Greenleaf, W. J.). Humana, New York, NY (2023)

Engel, C.: Purification of crystallization-grade RNA polymerase I from S. cerevisiae. In: The Nucleolus, pp. 85 - 97 (Ed. Németh, A.). Springer; Humana Pr., New York, N.Y. (2016)

Cramer, P.; Wolberger, C.: Proteins: histones and chromatin. Current Opinion in Structural Biology 21 (6), pp. 695 - 697 (2011)

Cramer, P.; Arnold, E.: Proteins: how RNA polymerases work. Current Opinion in Structural Biology 19 (6), pp. 680 - 682 (2009)

Karpinska, M. A.; Zhu, Y.; Fakhraei Ghazvini, Z.; Ramasamy, S.; Barbieri, M.; Cao, N. T. B.; Lidschreiber, M.; Papantonis, A.; Oudelaar, A. M.: CTCF depletion decouples enhancer-mediated gene activation from chromatin hub formation during cellular differentiation. bioRxiv (2025)

Welp, L. M.; Sachsenberg, T.; Wulf, A.; Chernev, A.; Horokhovskyi, Y.; Neumann, P.; Pašen, M.; Siraj, A.; Raabe, M.; Johannsson, S. et al.; Schmitzova, J.; Netz, E.; Pfeuffer, J.; He, Y.; Fritzemeier, K.; Delanghe, B.; Viner, R.; Vos, S. M.; Cramer, P.; Ficner, R.; Liepe, J.; Kohlbacher, O.; Urlaub, H.: Chemical crosslinking extends and complements UV crosslinking in analysis of RNA/DNA nucleic acid–protein interaction sites by mass spectrometry. bioRxiv (2024)