Publications

101.

Journal Article

Kutzner, C.; Miletić, V.; Palacio Rodríguez, K.; Rampp, M.; Hummer, G.; de Groot, B. L.; Grubmüller, H.: Scaling of the GROMACS Molecular Dynamics Code to 65k CPU Cores on an HPC Cluster. Journal of Computational Chemistry 46 (5), e70059 (2025)

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102.

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Dieball, C.; Mohebi Satalsari, Y.; Zuccolotto-Bernez, A. B.; Egelhaaf, S. U.; Escobedo-Sánchez, M. A.; Godec, A.: Precisely controlled colloids: a playground for path-wise non-equilibrium physics. Soft Matter 21 (11), pp. 2170 - 2181 (2025)

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103.

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Dierksen, F.; Geibel, J. S.; Albrecht, J.; Hofer, S.; Dechent, P.; Hesse, A. C.; Frahm, J.; Bähr, M.; Koch, J. C.; Liman, J. et al.; Maier, I. L.: T1-relaxation times along the corticospinal tract as a diagnostic marker in patients with amyotrophic lateral sclerosis. Frontiers in Neuroimaging 4, 1549727 (2025)

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104.

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Blom, K.; Thiele, U.; Godec, A.: Local order controls the onset of oscillations in the nonreciprocal Ising model. Physical Review E 111 (2), 024207 (2025)

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105.

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Neben, M. C.; Wegerich, N.; Al Said, T. A.; Thompson, R. R.; Demeshko, S.; Dollberg, K.; Tkach, I.; Van Trieste, G. P.; Verplancke, H.; von Hänisch, C. et al.; Holthausen, M. C.; Powers, D. C.; Schnegg, A.; Schneider, S.: Transient Triplet Metallopnictinidenes M–Pn (M = Pd^II, Pt^II; Pn = P, As, Sb): Characterization and Dimerization. Journal of the American Chemical Society 147 (6), pp. 5330 - 5339 (2025)

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106.

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Lysakovskaia, K.; Devadas, A.; Schwalb, B.; Lidschreiber, M.; Cramer, P.: Promoter-proximal RNA polymerase II termination regulates transcription during human cell type transition. Nature Structural & Molecular Biology (2025)

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supplementary-material

107.

Journal Article

Outeiro, T. F.; Höglinger, G.; Lang, A. E.; Vieira, T. C. R. G.: Protein misfolding: understanding biology to classify and treat synucleinopathies. Journal of Neural Transmission (2025)

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108.

Journal Article

Zhang, L.; Nitz, F.; Borodin, D.; Wodtke, A. M.; Guo, H.: Ring Polymer Molecular Dynamics Rates for Hydrogen Recombinative Desorption on Pt(111). Precision Chemistry (2025)

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109.

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Duque, M.; Chen, A. B.; Hsu, E.; Narayan, S.; Rymbek, A.; Begum, S.; Saher, G.; Cohen, A. E.; Olson, D. E.; Li, Y. et al.; Prober, D. A.; Bergles, D. E.; Fishman, M. C.; Engert, F.; Ahrens, M. B.: Ketamine induces plasticity in a norepinephrine-astroglial circuit to promote behavioral perseverance. Neuron 113 (3), pp. 426 - 443.e5 (2025)

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110.

Journal Article

Kallos, I. S.; Benfreha, K.; Golibrzuch, K.; Zhao, H.; Bar, I.; Schäfer, T.; Rahinov, I.; Wodtke, A. M.; Baraban, J. H.: Resonance-enhanced multiphoton ionization detection of vibrationally excited O₂. The Journal of Chemical Physics 162 (5), 051103 (2025)

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111.

Journal Article

Sucre, O.; Glöggler, S.: Optimization Method Based on Zonal Harmonics for Axially Symmetric Magnets. IEEE Transactions on Magnetics 61 (2), 5100109 (2025)

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112.

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Bochert, D.; Hofer, S.; Dechent, P.; Frahm, J.; Bähr, M.; Liman, J.; Maier, I.: Blood Flow Velocities as Determined by Real‐Time Phase‐Contrast MRI in Patients with Carotid Artery Stenosis. Journal of Neuroimaging 35 (1), e70016 (2025)

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113.

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Dullin, C.; Alves, F.: Einsatz von künstlicher Intelligenz in der Endoskopie zur Analyse von Gewebebiopsien. Die Gastroenterologie 20, pp. 44 - 53 (2025)

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114.

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Ferreira, N.; Kulkarni, A.; Agorku, D.; Midelashvili, T.; Hardt, O.; Legler, T. J.; Ströbel, P.; Conradi, L.-C.; Alves, F.; Ramos Gomes, F. et al.; Markus, M. A.: OrganoIDNet: a deep learning tool for identification of therapeutic effects in PDAC organoid-PBMC co-cultures from time-resolved imaging data. Cellular Oncology 48, pp. 101 - 122 (2025)

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115.

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Gąsiorowski, L.: Evidence for Multiple Independent Expansions of Fox Gene Families Within Flatworms. Journal of Molecular Evolution 93, pp. 124 - 135 (2025)

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116.

Journal Article

Hehlert, P.; Effertz, T.; Gu, R.-X.; Nadrowski, B.; Geurten, B. R. H.; Beutner, D.; de Groot, B. L.; Göpfert, M. C.: NOMPC ion channel hinge forms a gating spring that initiates mechanosensation. Nature Neuroscience 28, pp. 259 - 267 (2025)

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117.

Journal Article

Höltje, M.; Wolkowicz, A.; Brunk, I.; Baron, J.; Ahnert‐Hilger, G.: Gα_o1 and Gα_o1/Gα_o2 deletion differentially affect hippocampal mossy fiber tract anatomy and neuronal morphogenesis. Journal of Neurochemistry 169 (2), e16248 (2025)

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118.

Journal Article

Kauffmann, P.; Wolfer, S.; Behrens, C.; Schlosser, P.; Dullin, C.; Schirmer, U.; Liefeith, K.; Schliephake, H.: Dual growth factor release from collagen based polyelectrolyte multilayer films on Ti-implant enhances periimplant bone formation and angiogenic activity. Biomaterials Advances (accepted)

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119.

Journal Article

Lang, A. E.; Höglinger, G. U.; Adler, C. H.; Berg, D.; Klein, C.; Outeiro, T. F.; Poewe, W.; Postuma, R.; Stoessl, A. J.: Initial biological classification of Lewy body diseases: No consensus on terminology. Alzheimer's & Dementia 21 (2), e14449 (2025)

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120.

Journal Article

Rengachari, S.; Hainthaler, T.; Oberthür, C.; Lidschreiber, M.; Cramer, P.: Mechanism of polyadenylation-independent RNA polymerase II termination. Nature Structural & Molecular Biology 32, pp. 339 - 345 (2025)

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121.

Journal Article

Segelcke, D.; Sondermann, J. R.; Kappert, C.; Pradier, B.; Görlich, D.; Fobker, M.; Vollert, J.; Zahn, P. K.; Schmidt, M.; Pogatzki-Zahn, E. M.: Blood proteomics and multimodal risk profiling of human volunteers after incision injury: A translational study for advancing personalized pain management after surgery. Pharmacological Research 212, 107580 (2025)

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122.

Journal Article

Gąsiorowski, L.; Chai, C.; Rozanski, A.; Purandare, G.; Ficze, F.; Mizi, A.; Wang, B.; Rink, J. C.: Regeneration in the absence of canonical neoblasts in an early branching flatworm. Nature Communications 16, 1232 (2025)

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123.

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Oborská-Oplová, M.; Geiger, A. G.; Michel, E.; Klingauf-Nerurkar, P.; Dennerlein, S.; Bykov, Y. S.; Amodeo, S.; Schneider, A.; Schuldiner, M.; Rehling, P. et al.; Panse, V. G.: An avoidance segment resolves a lethal nuclear–mitochondrial targeting conflict during ribosome assembly. Nature Cell Biology 27, pp. 336 - 346 (2025)

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124.

Journal Article

Golibrzuch, K.; Wodtke, A. M.: A simple cavity-enhanced laser-based heater for reflective samples. Review of Scientific Instruments 96 (1), 015115 (2025)

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125.

Journal Article

Reimann, M.; Avsar, K.; DiNardo, A.; Goldmann, T.; Günther, G.; Hoelscher, M.; Ibraim, E.; Kalsdorf, B.; Kaufmann, S. H. E.; Köhler, N. et al.; Mandalakas, A.; Maurer, F.; Müller, M.; Nitschkowski, D.; Olaru, I.; Popa, C.; Rachow, A.; Rolling, T.; Salzer, H.; Sanchez-Carballo, P.; Schuhmann, M.; Schaub, D.; Spinu, V.; Terhalle, E.; Unnewehr, M.; Zielinski, N.; Heyckendorf, J.; Lange, C.: The TB27 Transcriptomic Model for Predicting Mycobacterium tuberculosis Culture Conversion. Pathogens and Immunity 10 (1), pp. 120 - 139 (2025)

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126.

Journal Article

Yousefi, R.; Cruz-Zaragoza, L.D.; Valpadashi, A.; Hansohn, C.; Dahal, D.; Richter-Dennerlein, R.; Rizzoli, S.; Urlaub, H.; Rehling, P.; Pacheu-Grau, D.: A microscopy-based screen identifies cellular kinases modulating mitochondrial translation. Cell Reports 44 (1), 115143 (2025)

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127.

Journal Article

Kassouf, M. T.; Francis, H. S.; Gosden, M.; Suciu, M. C.; Downes, D. J.; Harrold, C.; Larke, M.; Oudelaar, M.; Cornell, L.; Blayney, J. et al.; Telenius, J.; Xella, B.; Shen, Y.; Sousos, N.; Sharpe, J. A.; Sloane-Stanley, J.; Smith, A. J. H.; Babbs, C.; Hughes, J. R.; Higgs, D. R.: The α-globin super-enhancer acts in an orientation-dependent manner. Nature Communications 16, 1033 (2025)

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supplementary-material

128.

Journal Article

Fries, L. M.; Montrazi, E. T.; Allouche-Arnon, H.; Opazo, F.; Bar-Shir, A.; Frydman, L.; Glöggler, S.: Deuterated Nanopolymers for Renal and Lymphatic Imaging via Quantitative Deuterium MRI. Nano Letters 25 (5), pp. 1758 - 1764 (2025)

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129.

Journal Article

Frohn, J.; Böddeker, F.; Reichardt, M.; Bruns, H.; Czajka, T.; Khan, A.; Broche, L.; Krisch, M.; Bravin, A.; Alves, F. et al.; Zschüntzsch, J.; Salditt, T.: Three-dimensional structure of entire hydrated murine hearts at histological resolution. Scientific Reports 15, 2766 (2025)

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130.

Journal Article

Zhang, X. C.; Xue, K.; Salvi, M.; Schomburg, B.; Mehrens, jona, J.; Giller, K.; Stopp, M.; Weisenburger, S.; Böning, D.; Sandoghdar, V. et al.; Unden, G.; Becker, S.; Andreas, L. B.; Griesinger, C.: Mechanism of sensor kinase CitA transmembrane signaling. Nature Communications 16, 935 (2025)

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131.

Journal Article

Soni, K.; Horvath, A.; Dybkov, O.; Schwan, M.; Trakansuebkul, S.; Flemming, D.; Wild, K.; Urlaub, H.; Fischer, T.; Sinning, I.: Structures of aberrant spliceosome intermediates on their way to disassembly. Nature Structural & Molecular Biology (2025)

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132.

Journal Article

Sant, V.; Matthes, D.; Mazal, H.; Antonschmidt, L.; Wieser, F.; Movellan, K. T.; Xue, K.; Nimerovsky, E.; Stampolaki, M.; Nathan, M. et al.; Riedel, D.; Becker, S.; Sandoghdar, V.; de Groot, B. L.; Griesinger, C.; Andreas, L. B.: Lipidic folding pathway of α-Synuclein via a toxic oligomer. Nature Communications 16, 760 (2025)

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133.

Journal Article

Tsouraki, D.; Oudelaar, A. M.: Bridging the gap: How enhancers cooperate to regulate gene expression over large genomic distances. Molecular Cell 85 (2), pp. 199 - 201 (2025)

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134.

Journal Article

da Silva, I. S.; Cardoso, A. R.; Reimer, L.; König, A.; van Riesen, C.; Outeiro, T. F.; Jensen, P. H.; Sales, M. G. F.: α-Synuclein plastic antibody applied to monitor monomeric structures and discriminate aggregated forms in human CSF. Biosensors and Bioelectronics 268, 116880 (2025)

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135.

Journal Article

Savchenko, A. I.; Belov, V. N.; Bossi, M. L.; Hell, S. W.: Asymmetric Donor–Acceptor 2,7-Disubstituted Fluorenes and Their 9-Diazoderivatives: Synthesis, Optical Spectra and Photolysis. Molecules 30 (2), 321 (2025)

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136.

Journal Article

Wagener, M.G.; Kornblum, M.; Kiene, F.; Ganter, M.; Teichmann, U.: Influence of age on biochemical serum parameters in female alpacas – A retrospective study. Heliyon 11 (1), e41097 (2025)

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137.

Journal Article

Chakraborty, P.; Zweckstetter, M.: Interplay of p23 with FKBP51 and their chaperone complex in regulating tau aggregation. Nature Communications 16, 669 (2025)

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138.

Journal Article

Kulvicius, T.; Zhang, D.; Poustka, L.; Bölte, S.; Jahn, L.; Flügge, S.; Kraft, M.; Zweckstetter, M.; Nielsen-Saines, K.; Wörgötter, F. et al.; Marschik, P. B.: Deep learning empowered sensor fusion boosts infant movement classification. Communications Medicine 5, 16 (2025)

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139.

Journal Article

Nolte, P.; Gröger, C. J.; Frey, C.; Richter, H.; Will, F.; Bäuerle, T.; Schilling, A. F.; Alves, F.; Rußmann, C.; Dullin, C.: Automated Targeted Sectioning of Resin-embedded Hard Tissue Specimen Using Micro-computed Tomography in Combination with Laser Microtomy. IEEE Transactions on Biomedical Engineering (2025)

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140.

Journal Article

Saller, B. S.; Wöhrle, S.; Fischer, L.; Dufossez, C.; Ingerl, I. L.; Kessler, S.; Mateo-Tortola, M.; Gorka, O.; Lange, F.; Cheng, Y. et al.; Neuwirt, E.; Marada, A.; Koentges, C.; Urban, C.; Aktories, P.; Reuther, P.; Giese, S.; Kirschnek, S.; Mayer, C.; Pilic, J.; Falquez-Medina, H.; Oelgeklaus, A.; Deepagan, V. G.; Shojaee, F.; Zimmermann, J. A.; Weber, D.; Tai, Y.-H.; Crois, A.; Ciminski, K.; Peyronnet, R.; Brandenburg, K. S.; Wu, G.; Baumeister, R.; Heimbucher, T.; Rizzi, M.; Riedel, D.; Helmstädter, M.; Buescher, J.; Neumann, K.; Misgeld, T.; Kerschensteiner, M.; Walentek, P.; Kreutz, C.; Maurer, U.; Rambold, A. S.; Vince, J. E.; Edlich, F.; Malli, R.; Häcker, G.; Kierdorf, K.; Meisinger, C.; Köttgen, A.; Jakobs, S.; Weber, A. N.R.; Schwemmle, M.; Groß, C. J.; Groß, O.: Acute suppression of mitochondrial ATP production prevents apoptosis and provides an essential signal for NLRP3 inflammasome activation. Immunity 58 (1), pp. 90 - 107.e11 (2025)

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141.

Journal Article

Stampolaki, M.; Varkey, A. C.; Nimerovsky, E.; Leonov, A.; Becker, S.; Andreas, L. B.: Seeing double: the persistent dimer‐of‐dimers structure of drug resistant influenza A M2. Chemistry – A European Journal 31 (3), e202403129 (2025)

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142.

Journal Article

Van Haute, L.; Páleníková , P.; Tang, J. X.; Nash, P. A.; Simon, M. T.; Pyle, A.; Oláhová, M.; Powell, C. A.; Rebelo-Guiomar, P.; Stover, A. et al.; Champion, M.; Deshpande, C.; Baple, E. L.; Stals, K. L.; Ellard, S.; Anselem, O.; Molac, C.; Petrilli, G.; Loeuillet, L.; Grotto, S.; Attie-Bitach, T.; Abdenur, J. E.; Taylor, R. W.; Minczuk, M.: Pathogenic PDE12 variants impair mitochondrial RNA processing causing neonatal mitochondrial disease. Embo Molecular Medicine 17 (1), pp. 193 - 210 (2025)

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143.

Journal Article

Mrozek, P.; Grunewald, S.; Treffon, K.; Poschmann, G.; Rabe von Pappenheim, F.; Tittmann, K.; Gatz, C.: Molecular basis for the enzymatic inactivity of class III glutaredoxin ROXY9 on standard glutathionylated substrates. Nature Communications 16, 589 (2025)

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144.

Journal Article

Henke, J.-W.; Jeng, H.; Ropers, C.: Probing electron-photon entanglement using a quantum eraser. Physical Review A 111, 012610 (2025)

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145.

Journal Article

Zhao, Z.; Yang, X.; Wang, Y.; Quan, J.; Zhou, J.; Gao, S.; Zhou, X.; Cheng, G.; Qiao, D.; Yang, J. et al.; Zhang, W.; Yang, X.; Guo, H.; Park, G. B.: Putting the Incoming/Outgoing Correlation (INOUTCO) Ion Imaging Surface Scattering Technique to the Test in O Atom Scattering from Graphite. The Journal of Physical Chemistry C 129 (1), pp. 722 - 731 (2025)

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146.

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Oestreicher, D.; Malpede, A. M.; Reitmeier, A.; Bräuer, C. P.; Schoch, L.; Strenzke, N.; Pangrsic, T.: Noise-induced ribbon synapse loss in the mouse basal cochlear region does not reduce inner hair cell exocytosis. Frontiers in Cellular Neuroscience 18, 1523978 (2025)

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147.

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Tabanera-Bravo, J.; Godec, A.: Multiple Pareto-optimal solutions of the dissipation-adaptation trade-off. Physical Review Research 7, 013020 (2025)

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148.

Journal Article

Fonseca-Fonseca, L. A.; Fuentes, N. P.; Sánchez, J. R.; Iglesias, Á. T.; Outeiro, T. F.; Silva, V. D. A. d.; Costa, S. L.; Núñez-Figueredo, Y.: Correlational assessment of the effects of JM-20 in a rat model of parkinsonism. Behavioural Brain Research 476, 115269 (2025)

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149.

Journal Article

Ambrozkiewicz, M. C.; Lorenz, S.: Understanding ubiquitination in neurodevelopment by integrating insights across space and time. Nature Structural & Molecular Biology 32, pp. 14 - 22 (2025)

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150.

Journal Article

Coles, N. P.; Elsheikh, S.; Quesnel, A.; Butler, L.; Achadu, O.; Islam, M.; Kalesh, K.; Occhipinti, A.; Angione, C.; Marles-Wright, J. et al.; Koss, D. J.; Thomas, A. J.; Outeiro, T. F.; Filippou, P. S.; Khundakar, A. A.: Alpha-synuclein aggregation induces prominent cellular lipid changes as revealed by Raman spectroscopy and machine learning analysis. Brain Communications 7 (2), fcaf133 (2025)

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Journal Article (12861)

Publications of the MPI for Biophysical Chemistry

Publications of the MPI of Experimental Medicine until 2021