Publications

52.

Journal Article

Hahn, M. A.; Jin, S.-G.; Li, A. X.; Liu, J.; Huang, Z.; Wu, X.; Kim, B.-W.; Johnson, J.; Bilbao, A.-D. V.; Tao, S. et al.; Yim, J. A.; Fong, Y.; Goebbels, S.; Schwab, M. H.; Lu, Q.; Pfeifer, G. P.: Reprogramming of DNA methylation at NEUROD2-bound sequences during cortical neuron differentiation. Science Advances 5 (10), aax0080 (2019)

MPG.PuRe

53.

Journal Article

Djannatian, M.; Timmler, S.; Arends, M.; Luckner, M.; Weil, M.-T.; Alexopoulos, I.; Snaidero, N.; Schmid, B.; Misgeld, T.; Möbius, W. et al.; Schifferer, M.; Peles, E.; Simons, M.: Two adhesive systems cooperatively regulate axon ensheathment and myelin growth in the CNS. Nature Communications 10, 4794 (2019)

MPG.PuRe

54.

Journal Article

Rezaei-Ghaleh, N.; Munari, F.; Becker, S.; Assfalg, M.; Griesinger, C.: A facile oxygen-17 NMR method to determine effective viscosity in dilute, molecularly crowded and confined aqueous media. Chemical Communications 55 (82), pp. 12404 - 12407 (2019)

MPG.PuRe

55.

Journal Article

Blazquez, R.; Rietkötter, E.; Wenske, B.; Wlochowitz, D.; Sparrer, D.; Vollmer, E.; Müller, G.; Seegerer, J.; Sun, X.; Dettmer, K. et al.; Barrantes-Freer, A.; Stange, L.; Utpatel, K.; Bleckmann, A.; Treiber, H.; Bohnenberger, H.; Lenz, C.; Schulz, M.; Reimelt, C.; Hackl, C.; Grade, M.; Büyüktas, D.; Siam, L.; Balkenhol, M.; Stadelmann, C.; Kube, D.; Krahn, M. P.; Proescholdt, M. A.; Riemenschneider, M. J.; Evert, M.; Oefner, P. J.; Klein, C. A.; Hanisch, U. K.; Binder, C.; Pukrop, T.: LEF1 supports metastatic brain colonization by regulating glutathione metabolism and increasing ROS resistance in breast cancer. International Journal of Cancer, (in press) (2019)

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pre-print

56.

Journal Article

Kavatamane, V. K.; Duan, D.; Arumugam, S. R.; Raatz, N.; Pezzagna, S.; Meijer, J.; Balasubramanian, G.: Probing phase transitions in a soft matter system using a single spin quantum sensor. New Journal of Physics 21 (10), 103036 (2019)

MPG.PuRe

57.

Journal Article

Kutzner, C.; Páll, S.; Fechner, M.; Esztermann, A.; de Groot, B. L.; Grubmüller, H.: More bang for your buck: Improved use of GPU nodes for GROMACS 2018. Journal of Computational Chemistry 40 (27), pp. 2418 - 2431 (2019)

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pre-print

58.

Journal Article

Kumar, S.; Jiang, H.; Schwarzer, M.; Kandratsenka, A.; Schwarzer, D.; Wodtke, A. M.: Vibrational relaxation lifetime of a physisorbed molecule at a metal surface. Physical Review Letters 123 (15), 156101 (2019)

MPG.PuRe

59.

Journal Article

Bock, L. V.; Caliskan, N.; Korniy, N.; Peske, F.; Rodnina, M. V.; Grubmüller, H.: Thermodynamic control of −1 programmed ribosomal frameshifting. Nature Communications 10, 4598 (2019)

MPG.PuRe

60.

Journal Article

Ludwig, H. C.; Frahm, J.; Gärtner, J.; Dreha-Kulaczewski, S.: Breathing drives CSF: Impact on spaceflight disease and hydrocephalus. Proceedings of the National Academy of Sciences of the United States of America 116 (41), pp. 20263 - 20264 (2019)

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61.

Journal Article

Tegunov, D.; Cramer, P.: Real-time cryo-electron microscopy data preprocessing with Warp. Nature Methods 16, pp. 1146 - 1152 (2019)

MPG.PuRe

62.

Journal Article

Kollmeier, J.; Tan, Z.; Joseph, A. A.; Kalentev, O.; Voit, D.; Merboldt, K. D.; Frahm, J.: Real-time multi-directional flow MRI using model-based reconstructions of undersampled radial FLASH – A feasibility study. NMR in Biomedicine 32 (2019)

MPG.PuRe

63.

Journal Article

Bocker, H. T.; Heinrich, T.; Liebmann, L.; Hennings, J. C.; Seemann, E.; Gerth, M.; Jakovčevski, I.; Preobraschenski, J.; Kessels, M. M.; Westermann, M. et al.; Isbrandt, D.; Jahn, R.; Qualmann, B.; Hübner, C. A.: The Na⁺/H⁺ exchanger Nhe1 modulates network excitability via GABA release. Cerebral Cortex 29 (10), pp. 4263 - 4276 (2019)

MPG.PuRe

ZIP

64.

Journal Article

Erdmann, J.; Thöming, J. G.; Pohl, S.; Pich, A.; Lenz, C.; Häussler, S.: The core proteome of biofilm-grown clinical pseudomonas aeruginosa isolates. Cells 8 (10), 1129 (2019)

MPG.PuRe

ZIP

65.

Journal Article

Lin, C. C.; Zhang, S.; Hsu, C. Y.; Frahm, J.; Lu, T. W.; Shih, T. F.: Measuring three-dimensional tibiofemoral kinematics using dual-slice real-time magnetic resonance imaging. Medical Physics 46 (10), pp. 4588 - 4599 (2019)

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66.

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Marowsky, G.; Troe, J.; Viggiano, A. A.: On the competition between electron autodetachment and dissociation of molecular anions. Journal of The American Society for Mass Spectrometry 30 (10), pp. 1828 - 1834 (2019)

MPG.PuRe

67.

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Mitjans, M.; Seidel, J.; Begemann, M.; Bockhop, F.; Moya-Higueras, J.; Bansal, V.; Wesolowski, J.; Seelbach, A.; Ibáñez, M. I.; Kovacevic, F. et al.; Duvar, O.; Fañanás, L.; Wolf, H.-U.; Ortet, G.; Zwanzger, P.; Klein, V.; Lange, I.; Tänzer, A.; Dudeck, M.; Penke, L.; Tebartz van Elst, L.; Bittner, R. A.; Schmidmeier, R.; Freese, R.; Müller-Isberner, R.; Wiltfang, J.; Bliesener, T.; Bonn, S.; Pouska, L.; Müller, J. L.; Arias, B.; Ehrenreich, H.: Violent aggression predicted by multiple pre-adult environmental hits. Molecular Psychiatry 24, pp. 1549 - 1564 (2019)

MPG.PuRe

68.

Journal Article

Pan, H.; Oliveira, B.; Saher, G.; Dere, E.; Tapken, D.; Mitjans, M.; Seidel, J.; Wesolowski, J.; Wakhloo, D.; Klein-Schmidt, C. et al.; Ronnenberg, A.; Schwabe, K.; Trippe, R.; Mätz-Rensing, K.; Berghoff, S. A.; Al-Krinawe, Y.; Martens, H.; Begemann, M.; Stöcker, W.; Kaup, F.-J.; Mischke, R.; Boretius, S.; Nave, K.-A.; Krauss, J. K.; Hollmann, M.; Lühder, F.; Ehrenreich, H.: Uncoupling the widespread occurrence of anti-NMDAR1 autoantibodies from neuropsychiatric disease in a novel autoimmune model. Molecular Psychiatry 24 (10), pp. 1489 - 1501 (2019)

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69.

Journal Article

Schleper, A. L.; Bossi, M. L.; Belov, V. N.; Hell, S. W.: Mono- and bithiophene-substituted diarylethene photoswitches with emissive open or closed forms. Beilstein Journal of Organic Chemistry 15, pp. 2344 - 2354 (2019)

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70.

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Wegrzynowicz, M.; Bar-On, D.; Calo’, L.; Anichtchik, O.; Iovino, M.; Xia, J.; Ryazanov, S.; Leonov, A.; Giese, A.; Dalley, J. W. et al.; Griesinger, C.; Ashery, U.; Spillantini, M. G.: Depopulation of dense α-synuclein aggregates is associated with rescue of dopamine neuron dysfunction and death in a new Parkinson's disease model. Acta Neuropathologica 138 (4), pp. 575 - 595 (2019)

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71.

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Paul, D.; Stevanovic, D.: Eigenvector-based identification of bipartite subgraphs. Discrete Applied Mathematics 269, pp. 146 - 158 (2019)

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72.

Journal Article

Anikeeva, P.; Boyden, E.; Brangwynne, C.; Cisse, I. I.; Fiehn, O.; Fromme, P.; Gingras, A. C.; Greene, C. S.; Heard, E.; Hell, S. W. et al.; Hillman, E.; Jensen, G. J.; Karchin, R.; Kiessling, L. L.; Kleinstiver, B. P.; Knight, R.; Kukura, P.; Lancaster, M. A.; Loman, N.; Looger, L.; Lundberg, E.; Luo, Q. M.; Miyawaki, A.; Myers, E. W.; Nolan, G. P.; Picotti, P.; Reik, W.; Sauer, M.; Shalek, A. K.; Shendure, J.; Slavov, N.; Tanay, A.; Troyanskaya, O.; van Valen, D.; Wang, H. W.; Yi, C. Q.; Yin, P.; Zernicka-Goetz, M.; Zhuang, X. W.: Voices in methods development. Nature Methods 16 (10), pp. 945 - 951 (2019)

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73.

Journal Article

Gruhn, J. R.; Zielinska, A.; Shukla, V.; Blanshard, R.; Capalbo, A.; Cimadomo, D.; Nikiforov, D.; Chan, A. C.; Newnham, L. J.; Vogel, I. et al.; Scarica, C.; Krapchev, M.; Taylor, D.; Kristensen, S. G.; Cheng, J.; Ernst, E.; Bjørn, A. M. B.; Colmorn, L. B.; Blayney, M.; Elder, K.; Liss, J.; Hartshorne, G.; Grøndahl, M. L.; Rienzi, L.; Ubaldi, F.; McCoy, R.; Lukaszuk, K.; Andersen, C. Y.; Schuh, M.; Hoffmann, E. R.: Chromosome errors in human eggs shape natural fertility over reproductive life span. Science 365 (6460), pp. 1466 - 1469 (2019)

MPG.PuRe

74.

Journal Article

Chang, C. T.; Muthukumar, S.; Weber, R.; Levdansky, Y.; Chen, Y.; Bhandari, D.; Igreja, C.; Wohlbold, L.; Valkov, E.; Izaurralde, E.: A low-complexity region in human XRN1 directly recruits deadenylation and decapping factors in 5 '-3 ' messenger RNA decay. Nucleic Acids Research 47 (17), pp. 9282 - 9295 (2019)

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75.

Journal Article

Parra, R. G.; Papadopoulos, N.; Ahumada-Arranz, L.; El Kholtei, J.; Mottelson, N.; Horokhovsky, Y.; Treutlein, B.; Söding, J.: Reconstructing complex lineage trees from scRNA-seq data using MERLoT. Nucleic Acids Research 47 (17), pp. 8961 - 8974 (2019)

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76.

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Li, H.; Guo, Q.; Munk, A.: Multiscale change-point segmentation: beyond step functions. Electronic Journal of Statistics 13 (2), pp. 3254 - 3296 (2019)

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77.

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Wang, X.; Kohler, F.; Unterberg-Buchwald, C.; Lotz, J.; Frahm, J.; Uecker, M.: Model-based myocardial T1 mapping with sparsity constraints using single-shot inversion-recovery radial FLASH cardiovascular magnetic resonance. Journal of Cardiovascular Magnetic Resonance 21, 60 (2019)

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78.

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Werner, H. B.; Nave, K. A.: Enhanced actin dynamics: A therapeutic strategy for axonal regeneration? Neuron 103 (6), pp. 949 - 950 (2019)

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79.

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Papadopoulos, N.; Parra, R. G.; Söding, J.: PROSSTT: Probabilistic simulation of single-cell RNA-seq data for complex differentiation processes. Bioinformatics 35 (18), pp. 3517 - 3519 (2019)

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80.

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Steinegger, M.; Meier, M.; Mirdita, M.; Vöhringer, H.; Haunsberger, S. J.; Söding, J.: HH-suite3 for fast remote homology detection and deep protein annotation. BMC Bioinformatics 20 (1), 473 (2019)

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81.

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Wurm, C. A.; Schwarz, H.; Jans, D. C.; Riedel, D.; Humbel, B. M.; Jakobs, S.: Correlative STED super-resolution light and electron microscopy on resin sections. Journal of Physics D: Applied Physics 52 (37), 374003 (2019)

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82.

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Costa, W. S.; Van der Auwera, P.; Glock, C.; Liewald, J. F.; Bach, M.; Schüler, C.; Wabnig, S.; Oranth, A.; Masurat, F.; Bringmann, H. et al.; Schoofs, L.; Stelzer, E. H. K.; Fischer, S. C.; Gottschalk, A.: A GABAergic and peptidergic sleep neuron as a locomotion stop neuron with compartmentalized Ca2+dynamics. Nature Communications 10, 4095 (2019)

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83.

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Nagy, G.; Igaev, M.; Hoffmann, S. V.; Jones, N. C.; Grubmüller, H.: SESCA: Predicting circular dichroism spectra from protein molecular structures. Journal of Chemical Theory and Computation 15 (9), pp. 5087 - 5102 (2019)

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pre-print

84.

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Byczkowicz, N.; Eshra, A.; Montanaro, J.; Trevisiol, A.; Hirrlinger, J.; Kole, M.H.P.; Shigemoto, R.; Hallermann, S.: HCN channel-mediated neuromodulation can control action potential velocity and fidelity in central axons. eLife 8, 42766 (2019)

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85.

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Jevtic, Z.; Stoll, B.; Pfeiffer, F.; Sharma, K.; Urlaub, H.; Marchfelder, A.; Lenz, C.: The response of Haloferax volcanii to salt and temperature stress: A proteome study by label-free mass spectrometry. Proteomics 19 (20), 1840091 (2019)

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86.

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Hess, J. L.; Tylee, D. S.; Mattheisen, M.; Børglum, A. D.; Als, T. D.; Grove, J.; Werge, T.; Mortensen, P. B.; Mors, O.; Nordentoft, M. et al.; Hougaard, D. M.; Byberg-Grauholm, J.; Bækvad-Hansen, M.; Greenwood, T. A.; Tsuang, M. T.; Curtis, D.; Steinberg, S.; Sigurdsson, E.; Stefánsson, H.; Stefánsson, K.; Edenberg, H. J.; Holmans, P.; Faraone, S. V.; Glatt, S. J.: A polygenic resilience score moderates the genetic risk for schizophrenia. Molecular Psychiatry (2019)

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87.

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Bremmer, F.; Bohnenberger, H.; Küffer, S.; Oellerich, T.; Serve, H.; Urlaub, H.; Strauss, A.; Maatoug, Y.; Behnes, C. L.; Oing, C. et al.; Radzun, H. J.; Ströbel, P.; Balabanov, S.; Honecker, F.: Proteomic comparison of malignant human germ cell tumor cell lines. Disease Markers 2019, 8298524 (2019)

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88.

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Roeloffs, V. B.; Uecker, M.; Frahm, J.: Joint T1 and T2 mapping with tiny dictionaries and subspace-constrained reconstruction. IEEE Transactions on Medical Imaging, (in press) (2019)

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89.

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Gonzalez, N.; Arcos-Lopez, T.; König, A.; Quintanar, L.; Marquez, M. M.; Outeiro, T. F.; Fernandez, C. O.: Effects of alpha-synuclein post-translational modifications on metal binding. Journal of Neurochemistry 150 (5), pp. 507 - 521 (2019)

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90.

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González, N.; Arcos‐López, T.; König, A.; Quintanar, L.; Márquez, M. M.; Outeiro, T. F.; Fernandez, C. O.: Effects of alpha-synuclein posttranslational modifications on metal binding. Journal of Neurochemistry 150 (5), pp. 507 - 521 (2019)

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91.

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Karabinos, A.; Schünemann, J.; Parry, D. A. D.: Promiscuous dimerization between the Caenorhabditis elegans IF proteins and a hypothesis to explain how multiple IFs persist over evolutionary time. Journal of Molecular Evolution 87 (7-8), pp. 221 - 230 (2019)

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92.

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Mavroeidi, P.; Arvanitaki, F.; Karakitsou, A. K.; Vetsi, M.; Kloukina, I.; Zweckstetter, M.; Giller, K.; Becker, S.; Sorrentino, Z. A.; Giasson, B. I. et al.; Jensen, P. H.; Stefanis, L.; Xilouri, M.: Endogenous oligodendroglial alpha-synuclein and TPPP/p25α orchestrate alpha-synuclein pathology in experimental multiple system atrophy models. Acta Neuropathologica 138 (3), pp. 415 - 441 (2019)

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93.

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Oroz, J.; Blair, L. J.; Zweckstetter, M.: Dynamic Aha1 co-chaperone binding to human Hsp90. Protein Science 28 (9), pp. 1545 - 1551 (2019)

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94.

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Seif, A.; Hosseini, A.; Uhlig, J.; Streit, U.; Voit, D.; Uhlig, A.; Ellenrieder, V.; Ghadimi, M.; Sprenger, T.; Beham, A. et al.; Uecker, M.; Frahm, J.; Lotz, J.; Biggemann, L.: Real-time MRI for the dynamic assessment of fundoplication failure in patients with gastroesophageal reflux disease. European Radiology 29 (9), pp. 4691 - 4698 (2019)

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95.

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Tan, Z.; Voit, D.; Kollmeier, J. M.; Uecker, M.; Frahm, J.: Dynamic water/fat separation and B₀ inhomogeneity mapping-joint estimation using undersampled triple-echo multi-spoke radial FLASH. Magnetic Resonance in Medicine 82 (3), pp. 1000 - 1011 (2019)

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96.

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Xue, K.; Mamone, S.; Koch, B.; Sarkar, R.; Reif, B.: Determination of methyl order parameters using solid state NMR under off magic angle spinning. Journal of Biomolecular NMR (8-9), pp. 471 - 475 (2019)

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97.

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Kreutzberger, A. J. B.; Kiessling, V.; Stroupe, C.; Liang, B.; Preobraschenski, J.; Ganzella, M.; Kreutzberger, M. A. B.; Nakamoto, R.; Jahn, R.; Castle, J. D. et al.; Tamm, L. K.: In vitro fusion of single synaptic and dense core vesicles reproduces key physiological properties. Nature Communications 10, 3904 (2019)

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98.

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Zhang, S.; Tischer, T.; Barford, D.: Cyclin A2 degradation during the spindle assembly checkpoint requires multiple binding modes to the APC/C. Nature Communications 10, 3863 (2019)

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99.

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Aldeghi, M.; Gapsys, V.; de Groot, B. L.: Predicting kinase inhibitor resistance: Physics-based and data-driven approaches. ACS Central Science 5 (8), pp. 1468 - 1474 (2019)

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100.

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Vandenberg, W.; Leutenegger, M.; Duwé, S.; Dedecker, P.: An extended quantitative model for super-resolution optical fluctuation imaging (SOFI). Optics Express 27 (18), pp. 25749 - 25766 (2019)

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