Publications of Gabor Nagy

Morgunova, E.; Nagy, G.; Yin, Y.; Zhu, F.; Nayak, S. P.; Xiao, T.; Sokolov, I.; Popov, A.; Laughton, C.; Grubmüller, H. et al.; Taipale, J.: Interfacial water confers transcription factors with dinucleotide specificity. Nature Structural & Molecular Biology 32, pp. 650 - 661 (2025)

Nagy, G.; Hoffmann, S. V.; Jones, N. C.; Grubmüller, H.: Reference Data Set for Circular Dichroism Spectroscopy Comprised of Validated Intrinsically Disordered Protein Models. Applied Spectroscopy 78 (9), pp. 897 - 911 (2024)

Kolar, M. H.; Nagy, G.; Kunkel, J.; Vaiana, S. M.; Bock, L. V.; Grubmüller, H.: Folding of VemP into translation-arresting secondary structure is driven by the ribosome exit tunnel. Nucleic Acids Research 50 (4), pp. 2258 - 2269 (2022)

Nagy, G.; Grubmüller, H.: Implementation of a Bayesian secondary structure estimation method for the SESCA circular dichroism analysis package. Computer Physics Communications 266, 108022 (2021)

Nagy, G.; Grubmueller, H.: How accurate is circular dichroism-based model validation? European Biophysics Journal 49 (6), pp. 497 - 510 (2020)

Nagy, G.; Igaev, M.; Hoffmann, S. V.; Jones, N. C.; Grubmüller, H.: SESCA: Predicting circular dichroism spectra from protein molecular structures. Journal of Chemical Theory and Computation 15 (9), pp. 5087 - 5102 (2019)

Nagy, G.; Milosevic, I.; Mohrmann, R.; Wiederhold, K.; Walter, A. M.; Soerensen, J. B.: The SNAP-25 linker as an adaptation toward fast exocytosis. Molecular Biology of the Cell 19 (9), pp. 3769 - 3781 (2008)

Nagy, G.; Kim, J. H.; Pang, Z. P.; Matti, U.; Rettig, J.; Suedhof, T. C.; Soerensen, J. B.: Different effects on fast exocytosis induced by synaptotagmin 1 and 2 isoforms and abundance but not by phosphorylation. Journal of Neuroscience 26 (2), pp. 632 - 643 (2006)

Soerensen, J. B.; Wiederhold, K.; Mueller, E. M.; Milosevic, I.; Nagy, G.; de Groot, B. L.; Grubmueller, H.; Fasshauer, D.: Sequential N-to C-terminal SNARE complex assembly drives priming and fusion of secretory vesicles. EMBO Journal 25, pp. 955 - 966 (2006)

Nagy, G.; Milosevic, I.; Fasshauer, D.; Mueller, E. M.; de Groot, B. L.; Lang, T.; Wilson, M. C.; Soerensen, J. B.: Alternative splicing of SNAP-25 regulates secretion through nonconservative substitutions in the SNARE domain. Molecular Biology of the Cell 16 (12), pp. 5675 - 5685 (2005)

Milosevic, I.; Soerensen, J. B.; Lang, T.; Krauss, M.; Nagy, G.; Haucke, V.; Jahn, R.; Neher, E.: Plasmalemmal phosphatidylinositol-4,5-bisphosphate level regulates the releasable vesicle pool size in chromaffin cells. The Journal of Neuroscience 25 (10), pp. 2557 - 2565 (2005)

Nagy, G.; Reim, K.; Matti, U.; Brose, N.; Binz, T.; Rettig, J.; Neher, E.; Soerensen, J. B.: Regulation of Releasable Vesicle Pool Sizes by Protein Kinase A-Dependent Phosphorylation of SNAP-25. Neuron 41 (3), pp. 417 - 429 (2004)

Brede, M.; Nagy, G.; Philipp, M.; Soerensen, J. B.; Lohse, M. J.; Hein, L.: Differential control of adrenal and sympathetic catecholamine release by alpha(2)-adrenoceptor subtypes. Molecular Endocrinology 17 (8), pp. 1640 - 1646 (2003)

Sørensen, J. B.; Nagy, G.; Varoqueaux, F.; Nehring, R.; Brose, N.; Wilson, M. C.; Neher, E.: Differential control of the releasable vesicle pools by SNAP-25 splice variants and SNAP-23. Cell 114 (1), pp. 75 - 86 (2003)

Nagy, G.; Matti, U.; Nehring, R.; Binz, T.; Rettig, J.; Neher, E.; Soerensen, J. B.: Protein kinase C-dependent phosphorylation of synaptosome- associated protein of 25 kDa at Ser¹⁸⁷ potentiates vesicle recruitment. The Journal of Neuroscience 22 (21), pp. 9278 - 9286 (2002)

Nagy, G.: Accurate CD spectrum predictions with SESCA: Including protein flexibility and side chains. 62nd Annual Meeting of the Biophysical-Society, San Francisco, CA, February 17, 2018 - February 21, 2018. Biophysical Journal 114 (3), p. 173a - 173a (2018)

Nagy, G.; Grubmüller, H.: A new method to predict the electronic circular dichroism spectra of proteins. 58th Annual Meeting of the Biophysical-Society, San Francisco, CA, February 15, 2014 - February 19, 2014. Biophysical Journal 112 (Suppl 1), p. 290a - 290a (2017)

Soerensen, J. B.; Nagy, G.: The neuronal SNARE complex: Is it involved in vesicle priming or calcium-dependent fusion? Biophysical Journal 88 (1), p. 174A - 174A (2005)

Otteson, L.; Nagy, G.; Kunkel, J.; Kodis, G.; Zheng, W.; Bignon, C.; Longhi, S.; Grubmüller, H.; Vaiana, A. C.; Vaiana, S. M.: Transient Non-local Interactions Dominate the Dynamics of Measles Virus N_TAIL. bioRxiv (2024)

Nagy, G.; Grubmüller, H.: How accurate are circular dichroism based secondary structure estimates? bioRxiv (2020)