Publications of Aukje Marieke Oudelaar
All genres
Journal Article (29)
Journal Article
56, pp. 483 - 492 (2024)
In vitro reconstitution of chromatin domains shows a role for nucleosome positioning in 3D genome organization. Nature Genetics
Journal Article
52 (2), pp. 793 - 802 (2024)
Genome organization across scales: mechanistic insights from in vitro reconstitution studies. Biochemical Society Transactions
Journal Article
30 (7), pp. 876 - 877 (2023)
The Mediator complex regulates long-range communication in the genome. Nature Structural & Molecular Biology
Journal Article
30, pp. 991 - 1000 (2023)
The Mediator complex regulates enhancer-promoter interactions. Nature Structural and Molecular Biology
Journal Article
79, 102022 (2023)
The role of loop extrusion in enhancer-mediated gene activation. Current Opinion in Genetics & Development
Journal Article
54 (7), pp. 914 - 915 (2022)
Deciphering the regulatory logic of a chromatin domain boundary. Nature Genetics
Journal Article
13, 2139 (2022)
Analysis of sub-kilobase chromatin topology reveals nano-scale regulatory interactions with variable dependence on cohesin and CTCF. Nature Communications
Journal Article
17 (2), pp. 445 - 475 (2022)
Capture-C: a modular and flexible approach for high-resolution chromosome conformation capture. Nature Protocols
Journal Article
13, 773 (2022)
Dynamic Runx1 chromatin boundaries affect gene expression in hematopoietic development. Nature Communications
Journal Article
12, 4439 (2021)
Reactivation of a developmentally silenced embryonic globin gene. Nature Communications
Journal Article
595 (7865), pp. 125 - 129 (2021)
Defining genome architecture at base-pair resolution. Nature
Journal Article
12, 3806 (2021)
A gain-of-function single nucleotide variant creates a new promoter which acts as an orientation-dependent enhancer-blocker. Nature Communications
Journal Article
67, pp. 18 - 24 (2021)
The mouse alpha-globin cluster: A paradigm for studying genome regulation and organization. Current Opinion in Genetics & Development
Journal Article
81 (5), pp. 983 - 997.e7 (2021)
Enhancers predominantly regulate gene expression during differentiation via transcription initiation. Molecular Cell
Journal Article
22, pp. 154 - 168 (2021)
The relationship between genome structure and function. Nature Reviews Genetics
Journal Article
12, 531 (2021)
High-resolution targeted 3C interrogation of cis-regulatory element organization at genome-wide scale. Nature Communications
Journal Article
17 (11), pp. 1118 - 1124 (2020)
DeepC: predicting 3D genome folding using megabase-scale transfer learning. Nature Methods
Journal Article
11, 2722 (2020)
Dynamics of the 4D genome during in vivo lineage specification and differentiation. Nature Communications
Journal Article
30 (7), pp. 2125 - 2135.e1-e5 (2020)
A dynamic folded hairpin conformation is associated with α-globin activation in erythroid cells. Cell Reports
Journal Article
10, 5412 (2019)
A revised model for promoter competition based on multi-way chromatin interactions at the α-globin locus. Nature Communications