Publications

de Luca, K. L.; Rullens, P. M. J.; Karpinska, M. A.; de Vries, S. S.; Gacek-Matthews, A.; Pongor, L. S.; Legube, G.; Jachowicz, J. W.; Oudelaar, A. M.; Kind, J.: Genome-wide profiling of DNA repair proteins in single cells. Nature Communications 15, 9918 (2024)

Aljahani, A.; Mauksch, C.; Oudelaar, A. M.: The relationship between nucleosome positioning and higher-order genome folding. Current Opinion in Cell Biology 89, 102398 (2024)

Palikyras, S.; Varamogiani-Mamatsi, V.; Zhu, Y.; Ramasamy, S.; Mizi, A.; Liebermann, I.; Stavropoulou, A.; Papadionysiou, I.; Bartsch, D.; Kargapolova, Y. et al.; Sofiadis, K.; Nikolaou, C.; Kurian, L.; Oudelaar, A. M.; Barbieri, M.; Papantonis, A.: Senescent cells cluster CTCF on nuclear speckles to sustain their splicing program. bioRxiv (2024)

Žumer, K.; Ochmann, M.; Aljahani, A.; Zheenbekova, A.; Devadas, A.; Maier, K. C.; Rus, P.; Neef, U.; Oudelaar, A. M.; Cramer, P.: FACT maintains chromatin architecture and thereby stimulates RNA polymerase II pausing during transcription in vivo. Molecular Cell 84 (11), pp. 2053 - 2069.e9 (2024)

Oberbeckmann, E.; Quililan, K.; Cramer, P.; Oudelaar, A. M.: In vitro reconstitution of chromatin domains shows a role for nucleosome positioning in 3D genome organization. Nature Genetics 56, pp. 483 - 492 (2024)

Oberbeckmann, E.; Oudelaar, A. M.: Genome organization across scales: mechanistic insights from in vitro reconstitution studies. Biochemical Society Transactions 52 (2), pp. 793 - 802 (2024)

Oncins, A.; Zaurin, R.; Toukabri, H.; Quililan, K.; Mora, J. R. H.; Karpinska, M. A.; Wernersson, E.; Smith, A.; Bianchi, A.; Albinati, L. et al.; Rivero, A.; Serra, F.; Gómez, R.; López, C.; Beà, S.; Halidi, N.; Valencia, A.; Bienko, M.; Oudelaar, A. M.; Beekman, R.: Translocations can drive expression changes of multiple genes in regulons covering entire chromosome arms. bioRxiv (2024)