Publikationen

252.

Zeitschriftenartikel

Absmeier, E.; Wollenhaupt, J.; Mozaffari-Jovin, S.; Becke, C.; Lee, C. T.; Preussner, M.; Heyd, F.; Urlaub, H.; Lührmann, R.; Santos, K. F. et al.; Wahl, M. C.: The large N-terminal region of the Brr2 RNA helicase guides productive spliceosome activation. Genes and Development 29 (24), S. 2576 - 2587 (2015)

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253.

Zeitschriftenartikel

Pleiner, T.; Bates, M.; Trakhanov, S.; Lee, C. T.; Schliep, J. E.; Chug, H.; Böhning, M.; Stark, H.; Urlaub, H.; Görlich, D.: Nanobodies: Site-specific labeling for super-resolution imaging, rapid epitope-mapping and native protein complex isolation. eLife 4, e11349 (2015)

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254.

Zeitschriftenartikel

Crisci, C.; Raleff, F.; Bagdul, I.; Raabe, M.; Urlaub, H.; Rain, J. C.; Krämer, A.: Mammalian splicing factor SF1 interacts with SURP domains of U2 snRNP-associated proteins. Nucleic Acids Research 43 (21), S. 10456 - 10473 (2015)

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255.

Zeitschriftenartikel

Zaman, U.; Richter, F. M.; Hofele, R. V.; Kramer, K.; Sachsenberg, T.; Kohlbacher, O.; Lenz, C.; Urlaub, H.: Dithiothreitol (DTT) acts as a specific, UV-inducible cross-linker in elucidation of protein-RNA interactions. Molecular and Cellular Proteomics 14 (12), S. 3196 - 3210 (2015)

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256.

Zeitschriftenartikel

Sharma, K.; Hrle, A.; Kramer, K.; Sachsenberg, T.; Staals, R. H. J.; Randau, L.; Marchfelder, A.; van der Oost, J.; Kohlbacher, O.; Conti, E. et al.; Urlaub, H.: Analysis of protein–RNA interactions in CRISPR proteins and effector complexes by UV-induced cross-linking and mass spectrometry. Methods 89, S. 138 - 148 (2015)

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257.

Zeitschriftenartikel

Port, S. A.; Monecke, T.; Dickmanns, A.; Spillner, C.; Hofele, R.; Urlaub, H.; Ficner, R.; Kehlenbach, H.: Structural and functional characterization of CRM1-Nup214 interactions reveals multiple FG-binding sites involved in nuclear export. Cell Reports 13 (4), S. 690 - 702 (2015)

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258.

Zeitschriftenartikel

Sakin, V.; Richter, S. M.; Hsiao, H. H.; Urlaub, H.; Melchior, F.: Sumoylation of the GTPase Ran by the RanBP2 SUMO E3 ligase complex. Journal of Biological Chemistry 290 (39), S. 23598 - 23602 (2015)

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259.

Zeitschriftenartikel

Boesler, C.; Rigo, N.; Agafonov, D. E.; Kastner, B.; Urlaub, H.; Will, C. L.; Lührmann, R.: Stable tri-snRNP integration is accompanied by a major structural rearrangement of the spliceosome that is dependent on Prp8 interaction with the 5‘ splice site. RNA 21 (11), S. 1993 - 2005 (2015)

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260.

Zeitschriftenartikel

Diaz, S. A.; Malonoski, A. P.; Susumu, K.; Hofele, R. V.; Oh, E.; Medintz, I. L.: Probing the kinetics of quantum dot-based proteolytic sensors. Analytical and Bioanalytical Chemistry 407 (24), S. 7307 - 7318 (2015)

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261.

Zeitschriftenartikel

Salat , D.; Winkler, A.; Urlaub, H.; Gessler, M.: Hey bHLH proteins interact with a FBXO45 containing SCF ubiquitin ligase complex and induce its translocation into the nucleus. PLOS One 10 (6), e0130288 (2015)

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262.

Zeitschriftenartikel

Kuvardina, O. N.; Herglotz, J.; Kolodziej, S.; Kohrs, N.; Herkt, S.; Wojcik, B.; Oellerich, T.; Corso, J.; Behrens, K.; Kumar, A. et al.; Hussong, H.; Urlaub, H.; Koch, J.; Serve, H.; Bonig, H.; Stocking, C.; Rieger, M. A.; Lausen, J.: RUNX1 represses the erythroid gene expression program during megakaryocytic differentiation. Blood 125 (23), S. 3570 - 3579 (2015)

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263.

Zeitschriftenartikel

Kadavath, H.; Hofele, R. V.; Biernat, J.; Kumar, S.; Tepper, K.; Urlaub, H.; Mandelkow, E.; Zweckstetter, M.: Tau stabilizes microtubules by binding at the interface between tubulin heterodimers. Proceedings of the National Academy of Sciences of the United States of America 112 (24), S. 7501 - 7506 (2015)

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264.

Zeitschriftenartikel

Cass, S. D. B.; Haas, K. A.; Stoll, B.; Alkhnbashi, O. S.; Sharma, K.; Urlaub, H.; Backofen, R.; Marchfelder, A.; Bolt, E. L.: The role of Cas8 in type I CRISPR interference. Bioscience Reports 35 (3), e00197 (2015)

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265.

Zeitschriftenartikel

Kost, N.; Kaiser, S.; Ostwal, Y.; Riedel, D.; Stützer, A.; Nikolov, M.; Rathke, C.; Renkawitz-Pohl, R.; Fischle, W.: Multimerization of Drosophila sperm protein Mst77F causes a unique condensed chromatin structure. Nucleic Acids Research 43 (6), S. 3033 - 3045 (2015)

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266.

Zeitschriftenartikel

Oellerich, T.; Mohr, S.; Corso, J.; Beck, J.; Döbele, C.; Braun, H.; Cremer, A.; Münch, S.; Wicht, J.; Oellerich, M. F. et al.; Bug, G.; Bohnenberger, H.; Perske, C.; Schütz, E.; Urlaub, H.; Serve, H.: FLT3-ITD and TLR9 use Bruton tyrosine kinase to activate distinct transcriptional programs mediating AML cell survival and proliferation. Blood 125 (12), S. 1936 - 1947 (2015)

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267.

Zeitschriftenartikel

Jorrin-Novo, J. V.; Pascual, J.; Sanchez-Lucas, R.; Romero-Rodriguez, M. C.; Rodriguez-Ortega, M. J.; Lenz, C.; Valledor, L.: Fourteen years of plant proteomics reflected in Proteomics: Moving from model species and 2DE-based approaches to orphan species and gel-free platforms. Proteomics 15 (5-6), S. 1089 - 1112 (2015)

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268.

Zeitschriftenartikel

Lin, T. Y.; Voronovsky, A.; Raabe, M.; Urlaub, H.; Sander, B.; Golas, M. M.: Dual tagging as an approach to isolate endogenous chromatin remodeling complexes from Saccharomyces cerevisiae. Biochimica et Biophysica Acta - Proteins and Proteomics 1854 (3), S. 198 - 208 (2015)

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269.

Zeitschriftenartikel

Timm, T.; Lenz, C.; Merkel, D.; Sadiffo, C.; Grabitzki, J.; Klein, J.; Lochnit, G.: Detection and site localization of phosphorylcholine-modified peptides by NanoLC-ESI-MS/MS using precursor ion scanning and multiple reaction monitoring experiments. Journal of the American Society of Mass Spectrometry 26 (3), S. 460 - 471 (2015)

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270.

Zeitschriftenartikel

Wohlgemuth, I.; Lenz, C.; Urlaub, H.: Studying macromolecular complex stoichiometries by peptide-based mass spectrometry. Proteomics 15 (5-6), S. 862 - 879 (2015)

MPG.PuRe

271.

Zeitschriftenartikel

Bohnenberger, H.; Ströbel, P.; Mohr, S.; Corso, J.; Berg, T.; Urlaub, H.; Lenz, C.; Serve, H.; Oellerich, T.: Quantitative mass spectrometric profiling of cancer-cell proteomes derived from liquid and solid tumors. Journal of Visualized Experiments 96, e52435 (2015)

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272.

Zeitschriftenartikel

De, I.; Bessonov, S.; Hofele, R.; Dos Santos, K.; Will, C. L.; Urlaub, H.; Lührmann, R.; Pena, V.: The RNA helicase Aquarius exhibits structural adaptations mediating its recruitment to spliceosomes. Nature Structural and Molecular Biology 22 (2), S. 138 - 144 (2015)

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273.

Zeitschriftenartikel

Lugassy, J.; Corso, J.; Beach, D.; Petrik, T.; Oellerich, T.; Urlaub, H.; Yablonski, D.: Modulation of TCR responsiveness by the Grb2-family adaptor, Gads. Cellular Signalling 27 (1), S. 125 - 134 (2015)

MPG.PuRe

274.

Zeitschriftenartikel

Hrle, A.; Maier, L. K.; Sharma, K.; Ebert, J.; Basquin, C.; Urlaub, H.; Marchfelder, A.; Conti, E.: Structural analyses of the CRISPR protein Csc2 reveal the RNA-binding interface of the type I-D Cas7 family. RNA Biology 11 (8), S. 1072 - 1082 (2014)

MPG.PuRe

275.

Zeitschriftenartikel

Petrova, D. T.; Schultze, F. C.; Brandhorst, G.; Luchs, K. D.; Lenz, C.; Urlaub, H.; Rubel, D.; Gross, O.; Walson, P. D.; Oellerich, M.: Effects of mycophenolate mofetil on kidney function and phosphorylation status of renal proteins in Alport COL4A3-deficient mice. Proteome Science 12, 56 (2014)

MPG.PuRe

276.

Zeitschriftenartikel

Staals, R. H.; Zhu, Y.; Taylor, D. W.; Kornfeld, J. E.; Sharma, K.; Barendregt, A.; Koehorst, J. F.; Vlot, M.; Neupane, N.; Varossieau, K. et al.; Sakamoto, K.; Suzuki, T.; Dohmae, N.; Yokoyama, S.; Schaap, P. J.; Urlaub, H.; Heck, A. J. R.; Nogales, E.; Doudna, J. A.; Shinkai, A.; van der Oost, J.: RNA targeting by the type III-A CRISPR-Cas Csm complex of Thermus thermophilus. Molecular Cell 56 (4), S. 518 - 530 (2014)

MPG.PuRe

277.

Zeitschriftenartikel

Kramer, K.; Sachsenberg, T.; Beckmann, B. M.; Qamar, S.; Boon, K. L.; Hentze, M. W.; Kohlbacher, O.; Urlaub, H.: Photo-cross-linking and high-resolution mass spectrometry for assignment of RNA-binding sites in RNA-binding proteins. Nature Methods 11 (10), S. 1064 - 1070 (2014)

MPG.PuRe

278.

Zeitschriftenartikel

Lenz, C.; Urlaub, H.: Separation methodology to improve proteome coverage depth. Expert Review of Proteomics 11 (4), S. 409 - 414 (2014)

MPG.PuRe

279.

Zeitschriftenartikel

Moritz, B.; Lilie, H.; Naarmann-de Vries, I. S.; Urlaub, H.; Wahle, E.; Ostareck-Lederer, A.; Ostareck, D. H.: Biophysical and biochemical analysis of hnRNP K: Arginine methylation, reversible aggregation and combinatorial binding to nucleic acids. Biological Chemistry 395 (7-8), S. 837 - 853 (2014)

MPG.PuRe

ZIP

280.

Zeitschriftenartikel

Wilhelm, B. G.; Mandad, S.; Truckenbrodt, S.; Kröhnert, K.; Schäfer, C.; Rammner, B.; Koo, S. J.; Classen, G. A.; Krauss, M.; Haucke, V. et al.; Urlaub, H.; Rizzoli, S. O.: Composition of isolated synaptic boutons reveals the amounts of vesicle trafficking proteins. Science 344 (6187), S. 1023 - 1028 (2014)

MPG.PuRe

281.

Zeitschriftenartikel

Vazquez-Pianzola, P.; Adam, J.; Haldemann, D.; Hain, D.; Urlaub, H.; Suter, B.: Clathrin heavy chain plays multiple roles in polarizing the Drosophila oocyte downstream of Bic-D. Development 141 (9), S. 1915 - 1926 (2014)

MPG.PuRe

282.

Zeitschriftenartikel

Loedige, I.; Stotz, M.; Qamar, S.; Kramer, K.; Hennig, J.; Schubert, T.; Löffler, P.; Längst, G.; Merkl, R.; Urlaub, H. et al.; Meister, G.: The NHL domain of BRAT is an RNA-binding domain that directly contacts the hunchback mRNA for regulation. Genes and Development 28 (7), S. 749 - 764 (2014)

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283.

Zeitschriftenartikel

Plagens, A.; Tripp, V.; Daume, M.; Sharma, K.; Klingl, A.; Hrle, A.; Conti, E.; Urlaub, H.; Randau, L.: In vitro assembly and activity of an archaeal CRISPR-Cas type I-A Cascade interference complex. Nucleic Acids Research 42 (8), S. 5125 - 5138 (2014)

MPG.PuRe

284.

Zeitschriftenartikel

Brendel, J.; Stoll, B.; Lange, S. J.; Sharma, K.; Lenz, C.; Stachler, A. E.; Maier, L. K.; Richter, H.; Nickel, L.; Schmitz, R. A. et al.; Randau, L.; Allers, T.; Urlaub, H.; Backofen, R.; Marchfelder, A.: A complex of Cas proteins 5, 6, and 7 is required for the biogenesis and stability of Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR)-derived RNAs (crRNAs) in Haloferax volcanii. Journal of Biological Chemistry 289 (10), S. 7164 - 7177 (2014)

MPG.PuRe

285.

Zeitschriftenartikel

Schmidt, C.; Groenborg, M.; Deckert, J.; Bessonov, S.; Conrad, T.; Lührmann, R.; Urlaub, H.: Mass spectrometry–based relative quantification of proteins in precatalytic and catalytically active spliceosomes by metabolic labeling (SILAC), chemical labeling (iTRAQ), and label-free spectral count. RNA 20 (3), S. 406 - 420 (2014)

MPG.PuRe

286.

Zeitschriftenartikel

Biesemann, C.; Groenborg, M.; Luquet, E.; Wichert, S. P.; Bernard, V.; Bungers, S. R.; Cooper, B.; Varoqueaux, F.; Li, L.; Byrne, J. A. et al.; Urlaub, H.; Jahn, O.; Brose, N.; Herzog, E.: Proteomic screening of glutamatergic mouse brain synaptosomes isolated by fluorescence activated sorting. EMBO Journal 33 (2), S. 157 - 170 (2014)

MPG.PuRe

287.

Zeitschriftenartikel

Xiang, S. Q.; Gapsys, V.; Kim, H. Y.; Bessonov, S.; Hsiao, H. H.; Möhlmann, S.; Klaukien, V.; Ficner, R.; Becker, S.; Urlaub, H. et al.; Lührmann, R.; de Groot, B.; Zweckstetter, M.: Phosphorylation drives a dynamic switch in serine/arginine-rich proteins. Structure 21 (12), S. 2162 - 2174 (2013)

MPG.PuRe

288.

Zeitschriftenartikel

Engelke, M.; Oellerich, T.; Dittmann, K.; Hsiao, H. H.; Urlaub, H.; Serve, H.; Griesinger, C.; Wienands, J.: Cutting edge: Feed-forward activation of phospholipase C gamma 2 via C2 domain-mediated binding to SLP65. Journal of Immunology 191 (11), S. 5354 - 5358 (2013)

MPG.PuRe

289.

Zeitschriftenartikel

Pilla, E.; Kilisch, M.; Lenz, C.; Urlaub, H.; Geiss-Friedlander, R.: The SUMO1-E67 interacting loop peptide is an allosteric inhibitor of the dipeptidyl peptidases 8 and 9. Journal of Biological Chemistry 288 (45), S. 32787 - 32796 (2013)

MPG.PuRe

290.

Zeitschriftenartikel

Bhaskar, V.; Roudko, V.; Basquin, J.; Sharma, K.; Urlaub, H.; Seraphin, B.; Conti, E.: Structure and RNA-binding properties of the Not1-Not2Not5 module of the yeast Ccr4-Not complex. Nature Structrural and Molecular Biology 12 (20), S. 1281 - 1288 (2013)

MPG.PuRe

291.

Zeitschriftenartikel

Wirth, M.; Karaca, S.; Wenzel, D.; Ho, L.; Tishkoff, D.; Lombard, D. B.; Verdin, E.; Urlaub, H.; Jedrusik-Bode, M.; Fischle, W.: Mitochondrial SIRT4-type proteins in Caenorhabditis elegans and mammals interact with pyruvate carboxylase and other acetylated biotin-dependent carboxylases. Mitochondrion 13 (6), S. 705 - 720 (2013)

MPG.PuRe

292.

Zeitschriftenartikel

Christian, H.; Hofele, R. V.; Urlaub, H.; Ficner, R.: Insights into the activation of the helicase Prp43 by biochemical studies and structural mass spectrometry. Nucleic Acids Research 42 (2), S. 1162 - 1179 (2013)

MPG.PuRe

293.

Zeitschriftenartikel

Atanassov., I.; Urlaub, H.: Increased proteome coverage by combining PAGE and peptide isoelectric focusing: Comparative study of gel-based separation approaches. Proteomics 13 (20), S. 2947 - 2955 (2013)

MPG.PuRe

294.

Zeitschriftenartikel

Bareth, B.; Dennerlein, S.; Mick, D. U.; Nikolov, M.; Urlaub, H.; Rehling, P.: The heme a synthase Cox15 associates with cytochrome c oxidase assembly intermediates during Cox1 maturation. Molecular and Cellular Biology 33 (20), S. 4128 - 4137 (2013)

MPG.PuRe

295.

Zeitschriftenartikel

Kotzerke, K.; Mempel, M.; Aung, T.; Wulf, G. G.; Urlaub, H.; Wenzel, D.; Schön, M. P.; Braun, A.: Immunostimulatory activity of murine keratinocyte-derived exosomes. Experimental Dermatology 22 (10), S. 650 - 655 (2013)

MPG.PuRe

296.

Zeitschriftenartikel

Krüger, J. M.; Favaro, P. D.; Liu, M.; Kitlinska, A.; Huang, X. J.; Raabe, M.; Akad, D. S.; Liu, Y.; Urlaub, H.; Dong, Y. et al.; Xu, W.; Schlüter, O. M.: Differential roles of postsynaptic density-93 isoforms in regulating synaptic transmission. Journal of Neuroscience 33 (39), S. 15504 - 15517 (2013)

MPG.PuRe

297.

Zeitschriftenartikel

Sharif, H.; Ozgur, S.; Sharma, K.; Basquin, C.; Urlaub, H.; Conti, E.: Structural analysis of the yeast Dhh1-Pat1 complex reveals how Dhh1 engages Pat1, Edc3 and RNA in mutually exclusive interactions. Nucleic Acids Research 41 (17), S. 8377 - 8390 (2013)

MPG.PuRe

298.

Zeitschriftenartikel

Shema-Yaacoby, E.; Nikolov, M.; Haj-Yahya, M.; Siman, P.; Allemand, E.; Yamaguchi, Y.; Muchardt, C.; Urlaub, H.; Brik, A.; Oren, M. et al.; Fischle, W.: Systematic identification of proteins binding to chromatin-embedded ubiquitylated H2B reveals recruitment of SWI/SNF to regulate transcription. Cell Reports 4 (3), S. 601 - 608 (2013)

MPG.PuRe

299.

Zeitschriftenartikel

Siman, P.; Karthikeyan, S. V.; Nikolov, M.; Fischle, W.; Brik, A.: Convergent chemical synthesis of histone H2B protein for the site-specific ubiquitination at Lys34. Angewandte Chemie-International Edition 52 (31), S. 8059 - 8063 (2013)

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300.

Zeitschriftenartikel

Grapp, M.; Wrede, A.; Schweizer, M.; Hüwel, S.; Galla, H.; Snaidero, N.; Simons, M.; Bückers, J.; Low, P. S.; Urlaub, H. et al.; Gärtner, J.; Steinfeld, R.: Choroid plexus transcytosis and exosome shuttling deliver folate into brain parenchyma. Nature Communications 4, 2123 (2013)

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