Publications

152.

Journal Article

Hett, T.; Zbik, T.; Mukherjee, S.; Matsuoka, H.; Bönigk, W.; Klose, D.; Rouillon, C.; Brenner, N.; Peuker, S.; Klement, R. et al.; Steinhoff, H.-J.; Grubmüller, H.; Seifert, R.; Schiemann, O.; Kaupp, U. B.: Spatiotemporal resolution of conformational changes in biomolecules by combining pulsed electron–electron double resonance spectroscopy with microsecond freeze-hyperquenching. Journal of the American Chemical Society 143 (18), pp. 6981 - 6989 (2021)

MPG.PuRe

153.

Journal Article

Gapsys, V.; Yildirim, A.; Aldeghi, M.; Khalak, Y.; van der Spoel, D.; de Groot, B. L.: Accurate absolute free energies for ligand-protein binding based on non-equilibrium approaches. Communications Chemistry 4, 61 (2021)

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154.

Journal Article

Banerjee, S.; Simonetti, F.L.; Detrois, K. E.; Kaphle, A.; Mitra, R.; Nagial, R.; Söding, J.: Tejaas: reverse regression increases power for detecting trans-eQTLs. Genome Biology 22, 142 (2021)

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155.

Journal Article

Caizzi, L.; Monteiro-Martins, S.; Schwalb, B.; Lysakovskaya, K.; Schmitzova, J.; Sawicka, A.; Chen, Y.; Lidschreiber, M.; Cramer, P.: Efficient RNA polymerase II pause release requires U2 snRNP function. Molecular Cell 81 (9), pp. 1920 - 1934.e9 (2021)

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156.

Journal Article

Roy, R. N.; Hendriks, K.; Kopec, W.; Abdolvand, S.; Weiss, K. L.; de Groot, B. L.; Lange, A.; Sun, H.; Coates, L.: Structural plasticity of the selectivity filter in a nonselective ion channel. IUCrJ 8 (3), pp. 421 - 430 (2021)

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157.

Journal Article

Kfir, O.; Di Giulio, V.; Garcia de Abajo, F. J.; Ropers, C.: Optical coherence transfer mediated by free electrons. Science Advances 7 (18), eabf6380 (2021)

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158.

Journal Article

Baumann, H. M.; Gapsys, V.; de Groot, B. L.; Mobley, D. L.: Challenges encountered applying equilibrium and nonequilibrium binding free energy calculations. Journal of Physical Chemistry B 125 (17), pp. 4241 - 4261 (2021)

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159.

Journal Article

Di Giulio, V.; Kfir, O.; Ropers, C.; Garcia de Abajo, F. J.: Modulation of cathodoluminescence emission by interference with external light. ACS Nano 15 (4), pp. 7290 - 7304 (2021)

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160.

Journal Article

Bünermann, O.; Kandratsenka, A.; Wodtke, A. M.: Inelastic scattering of H atoms from surfaces. Journal of Physical Chemistry A 125 (15), pp. 3059 - 3076 (2021)

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161.

Journal Article

Ge, W.; Meier, M.; Roth, C.; Söding, J.: Bayesian Markov models improve the prediction of binding motifs beyond first order. NAR: Genomics and Bioinformatics 3 (2), lquab026 (2021)

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162.

Journal Article

Jahnke, K.; Grubmüller, H.; Igaev, M.; Göpfrich, K.: Choice of fluorophore affects dynamic DNA nanostructures. Nucleic Acids Research 49 (7), pp. 4186 - 4195 (2021)

MPG.PuRe

163.

Journal Article

Liebtrau, M.; Sivis, M.; Feist, A.; Lourenço-Martins, H.; Pazos-Pérez, N.; Alvarez-Puebla, R. A.; García de Abajo, F. J.; Polman, A.; Ropers, C.: Spontaneous and stimulated electron–photon interactions in nanoscale plasmonic near fields. Light: Science & Applications 10, 82 (2021)

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164.

Journal Article

Matthias, J.; Engelhardt, J.; Schäfer, M.; Bauder-Wüst, U.; Meyer, P. T.; Haberkorn, U.; Eder, M.; Kopka, K.; Hell, S. W.; Eder, A.-C.: Cytoplasmic localization of prostate-specific membrane antigen inhibitors may confer advantages for targeted cancer therapies. Cancer Research 81 (8), pp. 2234 - 2245 (2021)

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165.

Journal Article

Mishto, M.; Mansurkhodzhaev, A.; Rodriguez-Calvo, T.; Liepe, J.: Potential mimicry of viral and pancreatic β cell antigens through non-spliced and cis-spliced zwitter epitope candidates in Type 1 Diabetes. Frontiers in Immunology 12, 656451 (2021)

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166.

Journal Article

Heinz, L. P.; Grubmüller, H.: Per|Mut: Spatially resolved hydration entropies from atomistic simulations. Journal of Chemical Theory and Computation 17 (4), pp. 2090 - 2098 (2021)

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167.

Journal Article

Hillen, H. S.; Markov, D. A.; Wojtas, I. D.; Hofmann, K. B.; Lidschreiber, M.; Cowan, A. T.; Jones, J. L.; Temiakov, D.; Cramer, P.; Anikin, M.: The pentatricopeptide repeat protein Rmd9 recognizes the dodecameric element in the 3′-UTRs of yeast mitochondrial mRNAs. Proceedings of the National Academy of Sciences of the USA 118 (15), e2009329118 (2021)

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168.

Journal Article

Lai, H.-L.; Fan, X.-X.; Li, R.-Z.; Wang, Y.-W.; Zhang, J.; Liu, L.; Neher, E.; Yao, X.-J.; Leung, E.L.-H.: Roles of Ion Fluxes, Metabolism, and Redox Balance in Cancer Therapy. Antioxidants & redox signaling 34 (14), pp. 1108 - 1127 (2021)

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169.

Journal Article

Siems, S. B.; Jahn, O.; Hoodless, L. J.; Jung, R. B.; Hesse, D.; Möbius, W.; Czopka, T.; Werner, H. B.: Proteome Profile of Myelin in the Zebrafish Brain. Frontiers in Cell and Developmental Biology 9, 640169 (2021)

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170.

Journal Article

Yousefi, R.; Fornasiero, E. F.; Cyganek, L.; Montoya, J.; Jakobs, S.; Rizzoli, S. O.; Rehling, P.; Pacheu-Grau, D.: Monitoring mitochondrial translation in living cells. EMBO Reports 22 (4), e51635 (2021)

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171.

Journal Article

Naarman-de Vries, I. S.; Senatore, R.; Moritz, B.; Marx, G.; Urlaub, H.; Niessing, D.; Ostareck, D. H.; Ostareck-Lederer, A.: Methylated HNRNPK acts on RPS19 to regulate ALOX15 synthesis in erythropoiesis. Nucleic Acids Research 49 (6), pp. 3507 - 3523 (2021)

MPG.PuRe

172.

Journal Article

Uno, K.; Aktalay, A.; Bossi, M. L.; Irie, M.; Belov, V. N.; Hell, S. W.: Turn-on mode diarylethenes for bioconjugation and fluorescence microscopy of cellular structures. Proceedings of the National Academy of Sciences of the USA 118 (14), e2100165118 (2021)

MPG.PuRe

173.

Journal Article

Farnung, L.; Ochmann, M.; Engeholm, M.; Cramer, P.: Structural basis of nucleosome transcription mediated by Chd1 and FACT. Nature Structural and Molecular Biology 28 (4), pp. 382 - 387 (2021)

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174.

Journal Article

Grimm, F.; Rehman, J.; Stoldt, S.; Khan, T. A.; Schlötel, J. G.; Nizamov, S.; John, M.; Belov, V. N.; Hell, S. W.: Rhodamines with a chloronicotinic acid fragment for live cell superresolution STED microscopy. Chemistry - A European Journal 27 (19), pp. 6070 - 6076 (2021)

MPG.PuRe

175.

Journal Article

Oudelaar, A. M.; Beagrie, R. A.; Kassouf, M. T.; Higgs, D. R.: The mouse alpha-globin cluster: A paradigm for studying genome regulation and organization. Current Opinion in Genetics & Development 67, pp. 18 - 24 (2021)

MPG.PuRe

176.

Journal Article

So, C.; Cheng, S.; Schuh, M.: Phase separation during germline development. Trends in Cell Biology 31 (4), pp. 254 - 268 (2021)

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177.

Journal Article

Wartosch, L.; Schindler, K.; Schuh, M.; Gruhn, J. R.; Hoffmann, E.R.; McCoy, R. C.; Xing, J.: Origins and mechanisms leading to aneuploidy in human eggs. Prenatal Diagnosis 41 (5), pp. 620 - 630 (2021)

MPG.PuRe

178.

Journal Article

Werner, M.; Gapsys, V.; de Groot, B. L.: One plus one makes three: Triangular coupling of correlated amino acid mutations. Journal of Physical Chemistry Letters 12 (12), pp. 3195 - 3201 (2021)

MPG.PuRe

179.

Journal Article

Choi, J.; Lysakovskaia, K.; Stik, G.; Demel, C.; Söding, J.; Tian, T. V.; Graf, T.; Cramer, P.: Evidence for additive and synergistic action of mammalian enhancers during cell fate determination. eLife 10, e65381 (2021)

MPG.PuRe

180.

Journal Article

Wohlgemuth, I.; Garofalo, R.; Samatova, E. N.; Günenç, A. N.; Lenz, C.; Urlaub, H.; Rodnina, M. V.: Translation error clusters induced by aminoglycoside antibiotics. Nature Communications 12, 1830 (2021)

MPG.PuRe

181.

Journal Article

Bi-Lin, K. W.; Seshachalam, P. V.; Tuoc, T.; Stoykova, A.; Ghosh, S.; Singh, M. K.: Critical role of the BAF chromatin remodeling complex during murine neural crest development. PLoS Genetics 17 (3), e1009446 (2021)

MPG.PuRe

182.

Journal Article

Medina, L.; González-Lizárraga, F.; Dominguez-Meijide, A.; Ploper, D.; Parrales, V.; Sequeira, S.; Cima-Omori, M.-S.; Zweckstetter, M.; Bel, E. D.; Michel, P. P. et al.; Outeiro, T. F.; Raisman-Vozari, R.; Chehín, R.; Socias, S. B.: Doxycycline Interferes With Tau Aggregation and Reduces Its Neuronal Toxicity. Frontiers in Aging Neuroscience 13, 635760 (2021)

MPG.PuRe

183.

Journal Article

Butola, T.; Alvanos, T.; Hintze, A.; Koppensteiner, P.; Kleindienst, D.; Shigemoto, R.; Wichmann, C.; Moser, T.: RIM-Binding Protein 2 organizes Ca2+channel topography and regulates release probability and vesicle replenishment at a fast central synapse. bioRxiv, 435607 (2021)

MPG.PuRe

184.

Journal Article

Butt, U. J.; Hassouna, I.; Fernandez Garcia-Agudo, L.; Steixner-Kumar, A. A.; Depp, C.; Barnkothe, N.; Zillmann, M. R.; Ronnenberg, A.; Bonet, V.; Goebbels, S. et al.; Nave, K.-A.; Ehrenreich, H.: CaMKIIα Expressing Neurons to Report Activity-Related Endogenous Hypoxia upon Motor-Cognitive Challenge. International Journal of Molecular Sciences 22 (6), 3164 (2021)

MPG.PuRe

185.

Journal Article

Peper, J.; Kownatzki-Danger, D.l.; Weninger, G.; Seibertz, F.; Pronto, J. R. D.; Sutanto, H.; Pacheu-Grau, D.; Hindmarsh, R.; Brandenburg, S.; Kohl, T. et al.; Hasenfuss, G.; Gotthardt, M.; Rog-Zielinska, E. A.; Wollnik, B.; Rehling, P.; Urlaub, H.; Wegener, J.; Heijman, J.; Voigt, N.; Cyganek, L.; Lenz, C.; Lehnart, S. E.: Caveolin3 stabilizes McT1-mediated lactate/proton transport in cardiomyocytes. Circulation Research 128 (6), pp. e102 - e120 (2021)

MPG.PuRe

186.

Journal Article

Ranjan, N.; Pochopien, A. A.; Wu, C. C.-C.; Beckert, B.; Blanchet, S.; Green, R.; Rodnina, M. V.; Wilson, D. N.: Yeast translation elongation factor eEF3 promotes late stages of tRNA translocation. EMBO Journal 40 (6), e106449 (2021)

MPG.PuRe

187.

Journal Article

Weber, M.; Leutenegger, M.; Stoldt, S.; Jakobs, S.; Mihaila, T. S.; Butkevich, A. N.; Hell, S. W.: MINSTED fluorescence localization and nanoscopy. Nature Photonics 15, pp. 361 - 366 (2021)

MPG.PuRe

188.

Journal Article

Buelens, F. P.; Leonov, H.; de Groot, B. L.; Grubmüller, H.: ATP-magnesium coordination: Protein structure-based force field evaluation and corrections. Journal of Chemical Theory and Computation 17 (3), pp. 1922 - 1930 (2021)

MPG.PuRe

189.

Journal Article

Schmidt, R.; Weihs, T.; Wurm, C. A.; Jansen, I.; Rehman, J.; Sahl, S. J.; Hell, S.: MINFLUX nanometer-scale 3D imaging and microsecond-range tracking on a common fluorescence microscope. Nature Communications 12, 1478 (2021)

MPG.PuRe

190.

Journal Article

Larke, M. S. C.; Schwessinger, R.; Nojima, T.; Telenius, J.; Beagrie, R. A.; Downes, D. J.; Oudelaar, A. M.; Truch, J.; Graham, B.; Bender, M. A. et al.; Proudfoot, N. J.; Higgs, D. R.; Hughes, J. R.: Enhancers predominantly regulate gene expression during differentiation via transcription initiation. Molecular Cell 81 (5), pp. 983 - 997.e7 (2021)

MPG.PuRe

191.

Journal Article

Rawat, P.; Böhning, M.; Hummel, B.; Aprile-Garcia, F.; Pandit, A. S.; Eisenhardt, N.; Khavaran, A.; Niskanen, E.; Vos, S. M.; Palvimo, J. J. et al.; Pichler, A.; Cramer, P.; Sawarkar, R.: Stress-induced nuclear condensation of NELF drives transcriptional downregulation. Molecular Cell 81 (5), pp. 1013 - 1026.e11 (2021)

MPG.PuRe

192.

Journal Article

Barysch, S. V.; Stankovic‐Valentin, N.; Miedema, K.-T.; Karaca, S.; Doppel, J.; Nait Achour, T.; Vasudeva, A.; Wolf, L.; Sticht, C.; Urlaub, H. et al.; Melchior, F.: Transient deSUMOylation of IRF2BP proteins controls early transcription in EGFR signaling. EMBO Reports 22 (3), e49651 (2021)

MPG.PuRe

193.

Journal Article

Daday, C.; de Groot, B. L.: Lipid–protein forces predict conformational changes in a mechanosensitive channel. European Biophysics Journal 50 (2), pp. 181 - 186 (2021)

MPG.PuRe

194.

Journal Article

de Groot, B. L.; Janshoff, A.; Steinem, C.; Zweckstetter, M.: Special issue: Multicomponent lipid membranes—how molecular organisation leads to function. European Biophysics Journal 50 (2), pp. 107 - 108 (2021)

MPG.PuRe

195.

Journal Article

Grothe, T.; Nowak, J.; Jahn, R.; Walla, P. J.: Selected tools to visualize membrane interactions. European Biophysics Journal 50 (2), pp. 211 - 222 (2021)

MPG.PuRe

196.

Journal Article

Kroppen, B.; Teske, N.; Yambire, K. F.; Denkert, N.; Mukherjee, I.; Tarasenko, D.; Jaipuria, G.; Zweckstetter, M.; Milosevic, I.; Steinem, C. et al.; Meinecke, M.: Cooperativity of membrane-protein and protein–protein interactions control membrane remodeling by epsin 1 and affects clathrin-mediated endocytosis. Cellular and Molecular Life Sciences 78 (5), pp. 2355 - 2370 (2021)

MPG.PuRe

197.

Journal Article

Najbauer, E.; Becker, S.; Giller, K.; Zweckstetter, M.; Lange, A.; Steinem, C.; de Groot, B. L.; Griesinger, C.; Andreas, L. B.: Structure, gating and interactions of the voltage-dependent anion channel. European Biophysics Journal 50 (2), pp. 159 - 172 (2021)

MPG.PuRe

198.

Journal Article

Oudelaar, A. M.; Higgs, D. R.: The relationship between genome structure and function. Nature Reviews Genetics 22, pp. 154 - 168 (2021)

MPG.PuRe

199.

Journal Article

Özçete, Ö. D.; Moser, T.: A sensory cell diversifies its output by varying Ca2+ influx‐release coupling among active zones. EMBO Journal 40 (5), e106010 (2021)

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200.

Journal Article

Pein, F.; Eltzner, B.; Munk, A.: Analysis of patchclamp recordings: model-free multiscale methods and software. European Biophysics Journal 50 (2), pp. 187 - 209 (2021)

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