Publications of J. Söding
All genres
Journal Article (115)
61.
Journal Article
484 (7394), pp. 386 - 389 (2012)
DBIRD complex integrates alternative mRNA splicing with RNA polymerase II transcript elongation. Nature 62.
Journal Article
40 (4), pp. 1509 - 1522 (2012)
The MOF-containing NSL complex associates globally with housekeeping genes, but activates only a defined subset. Nucleic Acids Research 63.
Journal Article
40 (W1), pp. W104 - W109 (2012)
The XXmotif web server for eXhaustive, weight matriX-based motif discovery in nucleotide sequences. Nucleic Acids Research 64.
Journal Article
9 (2), pp. 173 - 175 (2012)
HHblits: Lightning-fast iterative protein sequence searching by HMM-HMM alignment. Nature Methods 65.
Journal Article
6 (11), e27595 (2011)
A conserved GA element in TATA-less RNA polymerase II promoters. PLoS One 66.
Journal Article
7, 539 (2011)
Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega. Molecular Systems Biology 67.
Journal Article
21 (3), pp. 404 - 411 (2011)
Protein sequence comparison and fold recognition: progress and good-practice benchmarking. Current Opinion in Structural Biology 68.
Journal Article
6 (2), e16627 (2011)
Different binding properties and function of CXXC zinc finger domains in Dnmt1 and Tet1. PLoS One 69.
Journal Article
145 (1), pp. 54 - 66 (2011)
The Mre11:Rad50 structure shows an ATP-dependent molecular clamp in DNA double-strand break repair. Cell 70.
Journal Article
107 (46), pp. 19748 - 19753 (2010)
Cryo-EM structure and rRNA model of a translating eukaryotic 80S ribosome at 5.5-angstrom resolution. Proceedings of the National Academy of Sciences of the United States of America 71.
Journal Article
107 (46), pp. 19754 - 19759 (2010)
Localization of eukaryote-specific ribosomal proteins in a 5.5-angstrom cryo-EM map of the 80S eukaryotic ribosome. Proceedings of the National Academy of Sciences of the United States of America 72.
Journal Article
5 (10), e13402 (2010)
Of bits and bugs - On the use of bioinformatics and a bacterial crystal structure to solve a eukaryotic repeat-protein structure. PLoS One 73.
Journal Article
17 (10), pp. 1272 - 1278 (2010)
Uniform transitions of the general RNA polymerase II transcription complex. Nature Structural and Molecular Biology 74.
Journal Article
19 (1), pp. 124 - 130 (2010)
A galaxy of folds. Protein Science 75.
Journal Article
20 (7), pp. 812 - 825 (2010)
The molecular cell death machinery in the simple cnidarian Hydra includes an expanded caspase family and pro- and anti-apoptotic Bcl-2 proteins. Cell Research 76.
Journal Article
27 (6), pp. 1348 - 1358 (2010)
Evolution of outer membrane beta-barrels from an ancestral beta beta hairpin. Molecular Biology and Evolution 77.
Journal Article
106 (10), pp. 3770 - 3775 (2009)
Sequence context-specific profiles for homology searching. Proceedings of the National Academy of Sciences of the United States of America 78.
Journal Article
25 (2), pp. 159 - 162 (2009)
Phospholipid scramblases and Tubby-like proteins belong to a new superfamily of membrane tethered transcription factors. Bioinformatics 79.
Journal Article
9-10, pp. 22 - 23 (2009)
A boost for sequence searching. G.I.T. Laboratory Journal 80.
Journal Article
77 (S9), pp. 128 - 132 (2009)
Fast and accurate automatic structure prediction with HHpred. Proteins: Structure, Function, and Bioinformatics