Publications of Jochen C. Rink

Gąsiorowski, L.; Chai, C.; Rozanski, A.; Purandare, G.; Ficze, F.; Mizi, A.; Wang, B.; Rink, J. C.: Regeneration in the absence of canonical neoblasts in an early branching flatworm. Nature Communications 16, 1232 (2025)

Ivanković, M.; Brand, J. N.; Pandolfini, L.; Brown, T.; Pippel, M.; Rozanski, A.; Schubert, T.; Grohme, M. A.; Winkler, S.; Robledillo, L. et al.; Zhang, M.; Codino, A.; Gustincich, S.; Vila-Farré, M.; Zhang, S.; Papantonis, A.; Marques, A.; Rink, J. C.: A comparative analysis of planarian genomes reveals regulatory conservation in the face of rapid structural divergence. Nature Communications 15, 8215 (2024)

Lee, J.-R.; Boothe, T.; Mauksch, C.; Thommen, A.; Rink, J. C.: Epidermal turnover in the planarian Schmidtea mediterranea involves basal cell extrusion and intestinal digestion. Cell Reports 43 (7), 114305 (2024)

Gąsiorowski, L.; Dittmann, I. L.; Brand, J. N.; Ruhwedel, T.; Möbius, W.; Egger, B.; Rink, J. C.: Convergent evolution of the sensory pits in and within flatworms. BMC Biology 21 (1), 266 (2023)

Vila Farré, M.; Rozanski, A.; Ivanković, M.; Cleland, J. P.; Brand, J. N.; Thalen, F.; Grohme, M. A.; von Kannen, S.; Grosbusch, A. L.; Vu, H. T. K. et al.; Prieto, C. E.; Carbayo, F.; Egger, B.; Bleidorn, C.; Rasko, J. E. J.; Rink, J. C.: Evolutionary dynamics of whole-body regeneration across planarian flatworms. Nature Ecology & Evolution 7, pp. 2108 - 2124 (2023)

Boothe, T.; Ivanković, M.; Grohme, M. A.; Markus, M. A.; Dullin, C.; Xu, X.; Rink, J. C.: Content aware image restoration improves spatiotemporal resolution in luminescence imaging. Communications Biology 6, 518 (2023)

Drees, L.; Rink, J. C.: The planarian flatworm Schmidtea mediterranea. Nature Methods 20, pp. 3 - 5 (2023)

Dickmann, J. E. M.; Rink, J. C.; Jülicher, F.: Long-range morphogen gradient formation by cell-to-cell signal propagation. Physical Biology 19 (06), 066001 (2022)

Hall, R. N.; Weill, U.; Drees, L.; Leal-Ortiz, S.; Li, H.; Khariton, M.; Chai, C.; Xue, Y.; Rosental, B.; Quake, S. R. et al.; Alvarado, A. S.; Melosh, N. A.; Fire, A. Z.; Rink, J. C.; Wang, B.: Heterologous reporter expression in the planarian Schmidtea mediterranea through somatic mRNA transfection. Cell Reports: Methods 2 (10), 100298 (2022)

Howe, J.; Rink, J. C.; Wang, B.; Griffin, A. S.: Multicellularity in animals: The potential for within-organism conflict. Proceedings of the National Academy of Sciences of the USA 119 (32), e2120457119 (2022)

Basquin, C.; Ershov, D.; Gaudin, N.; Vu, h. T. K.; Louis, B.; Papon, J. F.; Orfila, A. M.; Mansour, S.; Rink, J. C.; Azimzadeh, J.: Emergence of a bilaterally symmetric pattern from chiral components in the planarian epidermis. Developmental Cell 51 (4), pp. 516 - 525.e5 (2019)

Vu, H. T. K.; Mansour, S.; Kücken, M.; Blasse, C.; Basquin, C.; Azimzadeh, J.; Myers, E. W.; Brusch, L.; Rink, J. C.: Dynamic polarization of the multiciliated planarian epidermis between body plan landmarks. Developmental Cell 51 (4), pp. 526 - 542 (2019)

Rozanski, A.; Moon, H.; Brandl, H.; Martin-Duran, J. M.; Grohme, M. A.; Hüttner, K.; Bartscherer, K.; Henry, I.; Rink, J. C.: PlanMine 3.0improvements to a mineable resource of flatworm biology and biodiversity. Nucleic Acids Research 47 (D1), pp. D812 - D820 (2019)

Thommen, A.; Werner, S.; Frank, O.; Philipp, J.; Knittelfelder, O.; Quek, Y.; Fahmy, K.; Shevchenko, A.; Friedrich, B. M.; Jülicher, F. et al.; Rink, J. C.: Body size-dependent energy storage causes Kleiber's law scaling of the metabolic rate in planarians. eLife 8, e38187 (2019)

Ivankovic, M.; Haneckova, R.; Thommen, A.; Grohme, M. A.; Vila-Farre, M.; Werner, S.; Rink, J. C.: Model systems for regeneration: Planarians. Development 146 (17), dev167684 (2019)

Simion, P.; Belkhir, K.; Francois, C.; Veyssier, J.; Rink, J. C.; Manuel, M.; Philippe, H.; Telford, M. J.: A software tool 'CroCo' detects pervasive cross-species contamination in next generation sequencing data. BMC Biology 16, 28 (2018)

Grohme, M. A.; Schloissnig, S.; Rozanski, A.; Pippel, M.; Young, G. R.; Winkler, S.; Brandl, H.; Dahl, A.; Powell, S.; Hiller, M. et al.; Myers, E.; Rink, J. C.: The genome of Schmidtea mediterranea and the evolution of core cellular mechanisms. Nature 554 (7690), pp. 56 - 61 (2018)

Sluys, R.; Vila Farre, M.; Rink, J. C.; Rasko, J. E. J.: An intriguing, new planarian species from Tasmania, with a discussion on protandry in triclad flatworms (Platyhelminthes, Tricladida). Acta Zoologica 99 (4), pp. 404 - 414 (2018)

Weigert, M.; Schmidt, U.; Boothe, T.; Müller, A.; Dibrov, A.; Jain, A.; Wilhelm, B.; Schmidt, D.; Broaddus, C.; Culley, S. et al.; Rocha-Martins, M.; Segovia-Miranda, F.; Norden, C.; Henriques, R.; Zerial, M.; Solimena, M.; Rink, J. C.; Tomancak, P.; Royer, L.; Jug, F.; Myers, E. W.: Content-aware image restoration: Pushing the limits of fluorescence microscopy. Nature Methods 15 (12), pp. 1090 - 1097 (2018)

Boothe, T.; Hilbert, L.; Heide, M.; Berninger, L.; Huttner, W. B.; Zaburdaev, V.; Vastenhouw, N. L.; Myers, E. W.; Drechsel, D. N.; Rink, J. C.: A tunable refractive index matching medium for live imaging cells, tissues and model organisms. eLife 6, e27240 (2017)