Publications of S. Donnini

Journal Article (4)

Journal Article
Dobrev, P.; Donnini, S.; Groenhof, G.; Grubmüller, H.: Accurate three states model for amino acids with two chemically coupled titrating sites in explicit solvent atomistic constant pH simulations and pKa calculations. Journal of Chemical Theory and Computation 13 (1), pp. 147 - 160 (2017)
Journal Article
Bennett, W. F. D.; Chen, A. W.; Donnini, S.; Groenhof, G.; Tieleman, D. P.: Constant pH simulations with the coarse-grained MARTINI model—Application to oleic acid aggregates. Canadian Journal of Chemistry 91 (9), pp. 839 - 846 (2013)
Journal Article
Donnini, S.; Villa, A.; Groenhof, G.; Mark, A. E.; Wierenga, R. K.; Juffer, A. H.: Inclusion of ionization states of ligands in affinity calculations. Proteins: Structure, Function, and Bioinformatics 76 (1), pp. 138 - 150 (2009)
Journal Article
Donnini, S.; Groenhof, G.; Wierenga, R. K.; Juffer, A. H.: The planar conformation of a strained proline ring: A QM/MM study. Proteins 64 (3), pp. 700 - 710 (2006)

Conference Paper (1)

Conference Paper
Bennett, W. F. D.; Donnini, S.; Groenhof, G.; Tielemann, D. P.: Fatty acid aggregates simulated using constant pH molecular dynamics with a coarse-grained model. 57th Annual Meeting of the Biophysical-Society , Philadelphia/PA, February 02, 2013 - February 06, 2013. Biophysical Journal 104 (Supplement 1), 2 Ed., p. 169A - 169A (2013)
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