Publications of Johannes Söding
All genres
Journal Article (115)
1.
Journal Article
DescribePROT in 2023: more, higher-quality and experimental annotations and improved data download options. Nucleic Acids Research, gkad985 (2023)
2.
Journal Article
5 (2), lqad057 (2023)
Cooperativity boosts affinity and specificity of proteins with multiple RNA-binding domains. NAR: genomics and bioinformatics 3.
Journal Article
Fast and accurate protein structure search with Foldseek. Nature Biotechnology (2023)
4.
Journal Article
5 (1), lqad007 (2023)
RNA sequencing indicates widespread conservation of circadian clocks in marine zooplankton. NAR: genomics and bioinformatics 5.
Journal Article
8 (15), eabj8633 (2022)
Cln5 represents a new type of cysteine-basedS-depalmitoylase linked to neurodegeneration. Science Advances 6.
Journal Article
18 (2), e9816 (2022)
Large-scale analysis of Drosophila core promoter function using synthetic promoters. Molecular Systems Biology 7.
Journal Article
37 (19), pp. 3364 - 3366 (2021)
SpacePHARER: sensitive identification of phages from CRISPR spacers in prokaryotic hosts. Bioinformatics 8.
Journal Article
37 (18), pp. 3029 - 3031 (2021)
Fast and sensitive taxonomic assignment to metagenomic contigs. Bioinformatics 9.
Journal Article
37, pp. i308 - i316 (2021)
Thermodynamic modeling reveals widespread multivalent binding by RNA-binding proteins. Bioinformatics 10.
Journal Article
37 (Suppl. 1), pp. i308 - i316 (2021)
Thermodynamic modeling reveals widespread multivalent binding by RNA-binding proteins. Bioinformatics 11.
Journal Article
368 (12), fnab067 (2021)
Going to extremes: A metagenomic journey into the dark matter of life. FEMS Microbiology Letters 12.
Journal Article
22, 142 (2021)
Tejaas: reverse regression increases power for detecting trans-eQTLs. Genome Biology 13.
Journal Article
3 (2), lquab026 (2021)
Bayesian Markov models improve the prediction of binding motifs beyond first order. NAR: Genomics and Bioinformatics 14.
Journal Article
10, e65381 (2021)
Evidence for additive and synergistic action of mammalian enhancers during cell fate determination. eLife 15.
Journal Article
49 (D1), pp. D298 - D308 (2021)
DescribePROT: database of amino acid-level protein structure and function predictions. Nucleic Acids Research 16.
Journal Article
72 (1), e108 (2020)
Protein sequence analysis using the MPI Bioinformatics Toolkit. Current Protocols in Bioinformatics 17.
Journal Article
79 (6), p. 1066 (2020)
A high-throughput screen for transcription activation domains reveals their sequence features and permits prediction by deep learning (Correction). Molecular Cell 18.
Journal Article
78 (5), pp. 890 - 902.e6 (2020)
A high-throughput screen for transcription activation domains reveals their sequence features and permits prediction by deep learning. Molecular Cell 19.
Journal Article
8, 48 (2020)
MetaEuk—sensitive, high-throughput gene discovery, and annotation for large-scale eukaryotic metagenomics. Microbiome 20.
Journal Article
30 (1), pp. 4 - 14 (2020)
Mechanisms for active regulation of biomolecular condensates. Trends in Cell Biology