Max-Planck-Institut für Multidisziplinäre Naturwissenschaften

Publikationen

Zeitschriftenartikel (31)

1.

Zeitschriftenartikel

Basquin, C.; Ershov, D.; Gaudin, N.; Vu, h. T. K.; Louis, B.; Papon, J. F.; Orfila, A. M.; Mansour, S.; Rink, J. C.; Azimzadeh, J.: Emergence of a bilaterally symmetric pattern from chiral components in the planarian epidermis. Developmental Cell 51 (4), S. 516 - 525 (2019)

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2.

Zeitschriftenartikel

Vu, H. T. K.; Mansour, S.; Kücken, M.; Blasse, C.; Basquin, C.; Azimzadeh, J.; Myers, E. W.; Brusch, L.; Rink, J. C.: Dynamic polarization of the multiciliated planarian epidermis between body plan landmarks. Developmental Cell 51 (4), S. 526 - 542 (2019)

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3.

Zeitschriftenartikel

Leria, L.; Vila Farre, M.; Solà, E.; Riutort, M.: Outstanding intraindividual genetic diversity in fissiparous planarians (Dugesia, Platyhelminthes) with facultative sex. BMC Evolutionary Biology 19, 130 (2019)

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publisher-version

4.

Zeitschriftenartikel

Rozanski, A.; Moon, H.; Brandl, H.; Martin-Duran, J. M.; Grohme, M. A.; Hüttner, K.; Bartscherer, K.; Henry, I.; Rink, J. C.: PlanMine 3.0improvements to a mineable resource of flatworm biology and biodiversity. Nucleic Acids Research 47 (D1), S. D812 - D820 (2019)

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publisher-version

5.

Zeitschriftenartikel

Thommen, A.; Werner, S.; Frank, O.; Philipp, J.; Knittelfelder, O.; Quek, Y.; Fahmy, K.; Shevchenko, A.; Friedrich, B. M.; Jülicher, F. et al.; Rink, J. C.: Body size-dependent energy storage causes Kleiber's law scaling of the metabolic rate in planarians. eLife 8, e38187 (2019)

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publisher-version

6.

Zeitschriftenartikel

Ivankovic, M.; Haneckova, R.; Thommen, A.; Grohme, M. A.; Vila-Farre, M.; Werner, S.; Rink, J. C.: Model systems for regeneration: Planarians. Development 146 (17), dev167684 (2019)

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publisher-version

7.

Zeitschriftenartikel

Simion, P.; Belkhir, K.; Francois, C.; Veyssier, J.; Rink, J. C.; Manuel, M.; Philippe, H.; Telford, M. J.: A software tool 'CroCo' detects pervasive cross-species contamination in next generation sequencing data. BMC Biology 16, 28 (2018)

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publisher-version

8.

Zeitschriftenartikel

Grohme, M. A.; Schloissnig, S.; Rozanski, A.; Pippel, M.; Young, G. R.; Winkler, S.; Brandl, H.; Dahl, A.; Powell, S.; Hiller, M. et al.; Myers, E.; Rink, J. C.: The genome of Schmidtea mediterranea and the evolution of core cellular mechanisms. Nature 554 (7690), S. 56 - 61 (2018)

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supplementary-material

9.

Zeitschriftenartikel

Sluys, R.; Vila Farre, M.; Rink, J. C.; Rasko, J. E. J.: An intriguing, new planarian species from Tasmania, with a discussion on protandry in triclad flatworms (Platyhelminthes, Tricladida). Acta Zoologica 99 (4), S. 404 - 414 (2018)

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10.

Zeitschriftenartikel

Weigert, M.; Schmidt, U.; Boothe, T.; Müller, A.; Dibrov, A.; Jain, A.; Wilhelm, B.; Schmidt, D.; Broaddus, C.; Culley, S. et al.; Rocha-Martins, M.; Segovia-Miranda, F.; Norden, C.; Henriques, R.; Zerial, M.; Solimena, M.; Rink, J. C.; Tomancak, P.; Royer, L.; Jug, F.; Myers, E. W.: Content-aware image restoration: Pushing the limits of fluorescence microscopy. Nature Methods 15 (12), S. 1090 - 1097 (2018)

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11.

Zeitschriftenartikel

Boothe, T.; Hilbert, L.; Heide, M.; Berninger, L.; Huttner, W. B.; Zaburdaev, V.; Vastenhouw, N. L.; Myers, E. W.; Drechsel, D. N.; Rink, J. C.: A tunable refractive index matching medium for live imaging cells, tissues and model organisms. eLife 6, e27240 (2017)

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publisher-version

12.

Zeitschriftenartikel

Stückemann, T.; Cleland, J. P.; Werner, S.; Vu, H. T. K.; Bayersdorf, R.; Liu, S. Y.; Friedrich, B.; Jülicher, F.; Rink, J. C.: Antagonistic self-organizing patterning systems control maintenance and regeneration of the anteroposterior axis in planarians. Developmental Cell 40 (3), S. 248 - 263 (2017)

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publisher-version

13.

Zeitschriftenartikel

Werner, S.; Vu, H. T. K.; Rink, J. C.: Self-organization in development, regeneration and organoids. Current Opinion in Cell Biology 44, S. 102 - 109 (2017)

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14.

Zeitschriftenartikel

Hoffmann, K. B.; Voss-Böhme, A.; Rink, J. C.; Brusch, L.: A dynamically diluted alignment model reveals the impact of cell turnover on the plasticity of tissue polarity patterns. Journal of the Royal Society Interface 14 (135), 20170466 (2017)

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15.

Zeitschriftenartikel

Brandl, H.; Moon, H.; Vila Farre, M.; Liu, S. Y.; Henry, I.; Rink, J. C.: PlanMine - A mineable resource of planarian biology and biodiversity. Nucleic Acids Research 44 (D1), S. D764 - D773 (2016)

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publisher-version

16.

Zeitschriftenartikel

Levin, M.; Anavy, L.; Cole, A. G.; Winter, E.; Mostov, N.; Khair, S.; Senderovich, N.; Kovalev, E.; Silver, D. H.; Feder, M. et al.; Fernandez-Valverde, S. L.; Nakanishi, N.; Simmons, D.; Simakov, O.; Larsson, T.; Liu, S. Y.; Jerafi-Vider, A.; Yaniv, K.; Ryan, J. F.; Martindale, M. Q.; Rink, J. C.; Arendt, D.; Degnan, S. M.; Degnan, B. M.; Hashimshony, T.; Yanai, I.: The mid-developmental transition and the evolution of animal body plans. Nature 531 (7596), S. 637 - 641 (2016)

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supplementary-material

17.

Zeitschriftenartikel

Vu, H. T. K.; Rink, J. C.; McKinney, S. A.; McClain, M.; Lakshmanaperumal, N.; Alexander, R.; Alvarado, A. S.: Stem cells and fluid flow drive cyst formation in an invertebrate excretory organ. eLife 4, e07405 (2015)

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publisher-version

18.

Zeitschriftenartikel

Werner, S.; Stückemann, T.; Amigo, M. B.; Rink, J. C.; Jülicher, F.; Friedrich, B. M.: Scaling and regeneration of self-organized patterns. Physical Review Letters 114 (13), 138101 (2015)

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publisher-version

19.

Zeitschriftenartikel

Werner, S.; Rink, J. C.; Riedel-Kruse, I. H.; Friedrich, B. M.: Shape mode analysis exposes movement patterns in biology: Flagella and flatworms as case studies. PLoS One 9 (11), e113083 (2014)

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publisher-version

20.

Zeitschriftenartikel

Liu, S. Y.; Selck, C.; Friedrich, B.; Lutz, R.; Vila Farre, M.; Dahl, A.; Brandl, H.; Lakshmanaperumal, N.; Henry, I.; Rink, J. C.: Reactivating head regrowth in a regeneration-deficient planarian species. Nature 500 (7460), S. 81 - 84 (2013)

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21.

Zeitschriftenartikel

Rink, J. C.: Stem cell systems and regeneration in planaria. Development Genes and Evolution 223 (1-2), S. 67 - 84 (2013)

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22.

Zeitschriftenartikel

Vij, S.; Rink, J. C.; Ho, H. K.; Babu, D.; Eitel, M.; Narasimhan, V.; Tiku, V.; Westbrook, J.; Schierwater, B.; Roy, S.: Evolutionarily ancient association of the FoxJ1 transcription factor with the motile ciliogenic program. PLoS Genetics 8 (11), e1003019 (2012)

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publisher-version

23.

Zeitschriftenartikel

Rink, J. C.; Vu, H. T. K.; Alvarado, A. S.: The maintenance and regeneration of the planarian excretory system are regulated by EGFR signaling. Development 138 (17), S. 3769 - 3780 (2011)

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24.

Zeitschriftenartikel

Collinet, C.; Stöter, M.; Bradshaw, C. R.; Samusik, N.; Rink, J. C.; Kenski, D.; Habermann, B.; Buchholz, F.; Henschel, R.; Mueller, M. S. et al.; Nagel, W. E.; Fava, E.; Kalaidzidis, Y.; Zerial, M.: Systems survey of endocytosis by multiparametric image analysis. Nature 464 (7286), S. 243 - 249 (2010)

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25.

Zeitschriftenartikel

Pearson, B. J.; Eisenhoffer, G. T.; Gurley, K. A.; Rink, J. C.; Miller, D. E.; Alvarado, A. S.: Formaldehyde-based whole-mount in situ hybridization method for planarians. Developmental Dynamics 238 (2), S. 443 - 450 (2009)

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26.

Zeitschriftenartikel

Rink, J. C.; Gurley, K. A.; Elliott, S. A.; Alvarado, A. S.: Planarian Hh signaling regulates regeneration polarity and links Hh pathway evolution to cilia. Science 326 (5958), S. 1406 - 1410 (2009)

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27.

Zeitschriftenartikel

Gurley, K. A.; Rink, J. C.; Alvarado, A. S.: Beta-catenin defines head versus tail identity during planarian regeneration and homeostasis. Science 319 (5861), S. 323 - 327 (2008)

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supplementary-material

28.

Zeitschriftenartikel

Del Conte-Zerial, P.; Brusch, L.; Rink, J. C.; Collinet, C.; Kalaidzidis, Y.; Zerial, M.; Deutsch, A.: Membrane identity and GTPase cascades regulated by toggle and cut-out switches. Molecular Systems Biology 4, 206 (2008)

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publisher-version

supplementary-material

29.

Zeitschriftenartikel

Rink, J. C.; Ghigo, E.; Kalaidzidis, Y.; Zerial, M.: Rab conversion as a mechanism of progression from early to late endosomes. Cell 122 (5), S. 735 - 749 (2005)

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30.

Zeitschriftenartikel

Johannes, E.; Collings, D. A.; Rink, J. C.; Strömgren Allen, N.: Cytoplasmic pH dynamics in maize pulvinal cells induced induced by gravity vector changes. Plant Physiology 127 (1), S. 119 - 130 (2001)

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31.

Zeitschriftenartikel

Collings, D. A.; Carter, C. N.; Rink, J. C.; Scott, A. C.; Wyatt, S. E.; Strömgren Allen, N.: Plant nuclei can contain extensive grooves and invaginations. The Plant Cell 12 (12), S. 2425 - 2439 (2000)

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Buch (1)

32.

Buch

Rink, J. C. (Hg.): Planarian Regeneration: Methods and Protocols. (2018)

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Buchkapitel (4)

33.

Buchkapitel

Grohme, M. A.; Vila Farre, M.; Rink, J. C.: Small- and large-scale high molecular weight genomic DNA extraction from planarians. In: Planarian Regeneration: Methods and Protocols (Hg. Rink, J. C.). Humana Press, Totowa, USA (2018)

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34.

Buchkapitel

Liu, S. Y.; Rink, J. C.: Total RNA isolation from planarian tissues. In: Planarian Regeneration: Methods and Protocols (Hg. Rink, J. C.). Humana Press, Totowa, USA (2018)

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35.

Buchkapitel

Rink, J. C.: Stem cells, patterning and regeneration in planarians: Self-organization at the organismal scale. In: Planarian Regeneration: Methods and Protocols (Hg. Rink, J. C.). Humana Press, Totowa, USA (2018)

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36.

Buchkapitel

Vila Farre, M.; Rink, J. C.: The ecology of freshwater planarians. In: Planarian Regeneration: Methods and Protocols (Hg. Rink, J. C.). Humana Press, Totowa, USA (2018)

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