Publications of J. Söding
All genres
Journal Article (115)
2019
Journal Article
47 (17), pp. 8961 - 8974 (2019)
Reconstructing complex lineage trees from scRNA-seq data using MERLoT. Nucleic Acids Research
Journal Article
35 (18), pp. 3517 - 3519 (2019)
PROSSTT: Probabilistic simulation of single-cell RNA-seq data for complex differentiation processes. Bioinformatics
Journal Article
20 (1), 473 (2019)
HH-suite3 for fast remote homology detection and deep protein annotation. BMC Bioinformatics
Journal Article
35 (16), pp. 2856 - 2858 (2019)
MMseqs2 desktop and local web server app for fast, interactive sequence searches. Bioinformatics
Journal Article
10 (1), 2909 (2019)
Lysine/RNA-interactions drive and regulate biomolecular condensation. Nature Communications
Journal Article
16, pp. 603 - 606 (2019)
Protein-level assembly increases protein sequence recovery from metagenomic samples manyfold. Nature Methods
Journal Article
8, e47040 (2019)
Transcriptome maps of general eukaryotic RNA degradation factors. eLife 2018
Journal Article
14 (12), e1007856 (2018)
Bayesian multiple logistic regression for case-control GWAS. PLoS Genetics
Journal Article
14 (11), e1006526 (2018)
Synthetic protein alignments by CCMgen quantify noise in residue-residue contact prediction. PLoS Computational Biology
Journal Article
430 (15), pp. 2237 - 2243 (2018)
A completely reimplemented MPI Bioinformatics Toolkit with a new HHpred server at its core. Journal of Molecular Biology
Journal Article
8, 9938 (2018)
An analysis and evaluation of the WeFold collaborative for protein structure prediction and its pipelines in CASP11 and CASP12. Scientific Reports
Journal Article
46 (W1), pp. W215 - W220 (2018)
The BaMM web server for de-novo motif discovery and regulatory sequence analysis. Nucleic Acids Research
Journal Article
9, 2542 (2018)
Clustering huge protein sequence sets in linear time. Nature Communications 2017
Journal Article
35 (11), pp. 1026 - 1028 (2017)
MMseqs2 enables sensitive protein sequence searching for the analysis of massive data sets. Nature Biotechnology
Journal Article
33 (19), pp. 3113 - 3114 (2017)
WIsH: Who is the host? Predicting prokaryotic hosts from metagenomic phage contigs. Bioinformatics
Journal Article
66 (1), pp. 38 - 49 (2017)
Genome-wide analysis of RNA polymerase II termination at protein-coding genes. Molecular Cell
Journal Article
355 (6322), pp. 248 - 249 (2017)
Big-data approaches to protein structure prediction. Science
Journal Article
45 (D1), pp. D170 - D176 (2017)
Uniclust databases of clustered and deeply annotated protein sequences and alignments. Nucleic Acids Research 2016
Journal Article
44 (13), pp. 6055 - 6069 (2016)
Bayesian Markov models consistently outperform PWMs at predicting motifs in nucleotide sequences. Nucleic Acids Research
Journal Article
44 (W1), pp. W410 - W415 (2016)
The MPI bioinformatics Toolkit as an integrative platform for advanced protein sequence and structure analysis. Nucleic Acids Research