Publications of M. A. Karpinska

de Luca, K. L.; Rullens, P. M. J.; Karpinska, M. A.; de Vries, S. S.; Gacek-Matthews, A.; Pongor, L. S.; Legube, G.; Jachowicz, J. W.; Oudelaar, A. M.; Kind, J.: Genome-wide profiling of DNA repair proteins in single cells. Nature Communications 15, 9918 (2024)

Ramasamy, S.; Aljahani, A.; Karpinska, M. A.; Cao, N. T. B.; Velychko, T.; Cruz, J. N.; Lidschreiber, M.; Oudelaar, A. M.: The Mediator complex regulates enhancer-promoter interactions. Nature Structural and Molecular Biology 30, pp. 991 - 1000 (2023)

Karpinska, M. A.; Oudelaar, A. M.: The role of loop extrusion in enhancer-mediated gene activation. Current Opinion in Genetics & Development 79, 102022 (2023)

Aljahani, A.; Hua, P.; Karpinska, M. A.; Quililan, K.; Davies, J. O. J.; Oudelaar, A. M.: Analysis of sub-kilobase chromatin topology reveals nano-scale regulatory interactions with variable dependence on cohesin and CTCF. Nature Communications 13, 2139 (2022)

Downes, D. J.; Smith, A. L.; Karpinska, M. A.; Velychko, T.; Rue-Albrecht, K.; Sims, D.; Milne, T. A.; Davies, J. O. J.; Oudelaar, A. M.; Hughes, J. R.: Capture-C: a modular and flexible approach for high-resolution chromosome conformation capture. Nature Protocols 17 (2), pp. 445 - 475 (2022)

Karpinska, M. A.; Zhu, Y.; Fakhraei Ghazvini, Z.; Ramasamy, S.; Barbieri, M.; Cao, N. T. B.; Lidschreiber, M.; Papantonis, A.; Oudelaar, A. M.: CTCF depletion decouples enhancer-mediated gene activation from chromatin hub formation during cellular differentiation. bioRxiv (2025)

Oncins, A.; Zaurin, R.; Toukabri, H.; Quililan, K.; Mora, J. R. H.; Karpinska, M. A.; Wernersson, E.; Smith, A.; Bianchi, A.; Albinati, L. et al.; Rivero, A.; Serra, F.; Gómez, R.; López, C.; Beà, S.; Halidi, N.; Valencia, A.; Bienko, M.; Oudelaar, A. M.; Beekman, R.: Translocations can drive expression changes of multiple genes in regulons covering entire chromosome arms. bioRxiv (2024)