Publications of H. Grubmueller

Grubmueller, H.: Force probe molecular dynamics simulations. In: Protein-ligand interactions; methods and applications, pp. 493 - 515 (Ed. Nienhaus, U.). Humana Pr., Totowa, NJ. (2005)

Grubmueller, H.: Proteins as molecular machines: force probe simulations. In: Computational soft matter: From synthetic polymers to proteins; Winter School, 29. Febr. - 6. March, 2004, Gustav-Stresemann-Institut Bonn, pp. 401 - 421 (Eds. Attig, N.; Binder, K.; Grubmueller, H.; Kremer, K.). John von Neumann Institute for Computing, Jülich (2004)

Tavan, P.; Grubmüller, H.: Selbstorganisation von Assoziativspeichern und Musterklassifikatoren: Rekurrente Signalverarbeitung auf topologischen Merkmalskarten. In: Kleinheubacher Berichte, Vol. 34, pp. 573 - 582 (1991)

Blom, K.; Igaev, M.; Godec, A.; Grubmüller, H.: Collective mechanochemical effects in microtubule dynamics: Theory and simulations. 64th Annual Meeting of the Biophysical-Society, San Diego, CA, February 15, 2020 - February 19, 2020. Biophysical Journal 118 (Suppl_1), 3 Ed., pp. 31A - 32A (2020)

Dobrev, P.; Vemulapalli, S. P.; Nath, N.; Griesinger, C.; Grubmüller, H.: Probing the accuracy of explicit solvent constant pH molecular dynamics simulations for peptides. 64th Annual Meeting of the Biophysical-Society, San Diego, CA, February 15, 2020 - February 19, 2020. Biophysical Journal 118 (3, Suppl. 1), p. 140A - 140A (2020)

Heinz, L. P.; Grubmüller, H.: Computing spatially resolved rotational hydration-shell entropies from MD simulations using an orientational k-nearest-neighbor density estimator. 64th Annual Meeting of the Biophysical-Society , San Diego, CA, February 15, 2020 - February 19, 2020. Biophysical Journal 118 (Suppl_1), 3 Ed., p. 141A - 141A (2020)

Ullmann, R. T.; Grubmüller, H.: A versatile Lambda-dynamics module for GROMACS. 64th Annual Meeting of the Biophysical-Society, San Diego, CA, February 15, 2020 - February 19, 2020. Biophysical Journal 118 (Suppl_1), 3 Ed., p. 138A - 138A (2020)

Volkhardt, A.; Grubmüller, H.: A scaling relation between accessible phase space volume and escape rates for random walks in high-dimensional hierarchical energy landscapes - Implications for protein dynamics. 64th Annual Meeting of the Biophysical-Society , San Diego, CA, February 15, 2020 - February 19, 2020. Biophysical Journal 118 (Suppl_1), 3 Ed., p. 139A - 139A (2020)

Bock, L. V.; Kolar, M. H.; Vaiana, A. C.; Russek, A.; von Ardenne, B.; Grubmüller, H.: Molecular basis for the extra-mitochondrial roles of cytochrome c in cell Life and death. Joint 12th EBSA European Biophysics Congress / 10th IUPAP International Conference on Biological Physics (ICBP), Madrid, Spain, July 20, 2019 - July 24, 2019. European Biophysics Journal 48 (Suppl 1), p. S52 - S52 (2019)

Igaev, M.; Kutzner, C.; Bock, L. V.; Vaiana, A. C.; Grubmüller, H.: Automated cryo-EM structure refinement using correlation -driven molecular dynamics. Joint 12th EBSA European Biophysics Congress / 10th IUPAP International Conference on Biological Physics (ICBP), Madrid, Spain, July 20, 2019 - July 24, 2019. European Biophysics Journal 48 (Suppl 1), p. S126 - S126 (2019)

Bock, L. V.; Caliskan, N.; Korniy, N.; Peske, F.; Rodnina, M. V.; Grubmüller, H.: Thermodynamic control of ribosomal frameshifting. 63rd Annual Meeting of the Biophysical-Society, Baltimore, MD, March 02, 2019 - March 06, 2019. Biophysical Journal 116 (Suppl_1), p. 361A - 361A (2019)

Heinz, L. P.; Grubmüller, H.: Charting the hydrophobic Effect: Computing spatially resolved absolute hydration shell entropies. 63rd Annual Meeting of the Biophysical-Society , Baltimore, MD, March 02, 2019 - March 06, 2019. Biophysical Journal 116 (Suppl_1), pp. 143A - 143 (2019)

Igaev, M.; Grubmüller, H.: Long-range mechanical coupling in the microtubule lattice. 63rd Annual Meeting of the Biophysical-Society , Baltimore, MD, March 02, 2019 - March 06, 2019. Biophysical Journal 116 (Suppl_1), p. 256A - 256A (2019)

Reinhardt, M.; Grubmüller, H.: Determining free energy differences through non-linear morphing. 63rd Annual Meeting of the Biophysical-Society, Baltimore, MD, March 02, 2019 - March 06, 2019. Biophysical Journal 116 (Suppl_1), p. 141A - 141A (2019)

Volkhardt, A.; Grubmüller, H.: Estimating the high dimensional ruggedness of protein free energy landscapes from molecular dynamics trajectories. 63rd Annual Meeting of the Biophysical-Society, Baltimore, MD, March 02, 2019 - March 06, 2019. Biophysical Journal 116 (Suppl_1), p. 341A - 341A (2019)

Bock, L. V.; Grubmüller, H.: Effects of cryo-EM freezing on the structural ensemble. 62nd Annual Meeting of the Biophysical Society, San Francisco, CA, February 17, 2018 - February 21, 2018. Biophysical Journal 114 (3, Suppl. 1), p. 160a - 160a (2018)

Buelens, F. P.; Leonov, H.; de Groot, B.; Grubmüller, H.: ATP as a fuel molecule: Evolutionary selection of magnesium-ATP interaction mode facilitates lossless chemomechanical coupling for ATPases. 62nd Annual Meeting of the Biophysical-Society, San Francisco, CA, February 17, 2018 - February 21, 2018. Biophysical Journal (Suppl), 3 Ed., p. 680a - 680a (2018)

Heinz, L. P.; Grubmüller, H.: Calculation of absolute solvation shell entropies from MD trajectories via permutation reduction. 62nd Annual Meeting of the Biophysical-Society, San Francisco, CA, February 17, 2018 - February 21, 2018. Biophysical Journal (Suppl), 3 Ed., p. 677a - 677a (2018)

Igaev, M.; Grubmüller, H.: Nucleotide-dependent conformational dynamics and energetics of tubulin. 62nd Annual Meeting of the Biophysical-Society , San Francisco, CA , February 17, 2018 - February 21, 2018. Biophysical Journal 114 (Suppl), 3 Ed., p. 504a - 504a (2018)

Vaiana, A. C.; Igaev, M.; Kutzner, C.; Grubmüller, H.: Fully automated correlation-based refinement of atomic models into high resolution cryo-EM density maps. 62nd Annual Meeting of the Biophysical-Society, San Francisco, CA, February 17, 2018 - February 21, 2018. Biophysical Journal 114 (3), p. 161a - 161a (2018)