Publications of Aleksandar Chernev

Sailer, A.-L.; Brendel, J.; Chernev, A.; König, S.; Bischler, T.; Gräfenhan, T.; Urlaub, H.; Gophna, U.; Marchfelder, A.: Internal in-frame translation generates Cas11b, which is important for effective interference in an archaeal CRISPR-Cas system. Frontiers in Microbiology 16, 1543464 (2025)

Siraj, A.; Bouwmeester, R.; Declercq, A.; Welp, L.; Chernev, A.; Wulf, A.; Urlaub, H.; Martens, L.; Degroeve, S.; Kohlbacher, O. et al.; Sachsenberg, T.: Intensity and retention time prediction improves the rescoring of protein‐nucleic acid cross‐links. Proteomics 24 (8), 2300144 (2024)

Xu, M.; Ito-Kureha, T.; Kang, H.-S.; Chernev, A.; Raj, T.; Hoefig, K. P.; Hohn, C.; Giesert, F.; Wang, Y.; Pan, W. et al.; Ziętara, N.; Straub, T.; Feederle, R.; Daniel, C.; Adler, B.; König, J.; Feske, S.; Tsokos, G. C.; Wurst, W.; Urlaub, H.; Sattler, M.; Kisielow, J.; Wulczyn, F. G.; Łyszkiewicz, M.; Heissmeyer, V.: The thymocyte-specific RNA-binding protein Arpp21 provides TCR repertoire diversity by binding to the 3’-UTR and promoting Rag1 mRNA expression. Nature Communications 15, 2194 (2024)

Kokic, G.; Yakoub, G.; van den Heuvel, D.; Wondergem, A. P.; van der Meer, P. J.; van der Weegen, Y.; Chernev, A.; Fianu, I.; Fokkens, T. J.; Lorenz, S. et al.; Urlaub, H.; Cramer, P.; Luijsterburg, M. S.: Structural basis for RNA polymerase II ubiquitylation and inactivation in transcription-coupled repair. Nature Structural & Molecular Biology 31, pp. 536 - 547 (2024)

Wicke, D.; Neumann, P.; Goessringer, M.; Chernev, A.; Davydov, S.; Poehlein, A.; Daniel, R.; Urlaub, H.; Hartmann, R. K.; Ficner, R. et al.; Stuelke, J.: The previously uncharacterized RnpM (YlxR) protein modulates the activity of ribonuclease P in Bacillus subtilis in vitro. Nucleic Acids Research 52 (3), pp. 1404 - 1409 (2023)

Jia, J.; Hilal, T.; Bohnsack, K. E.; Chernev, A.; Tsao, N.; Bethmann, J.; Arumugam, A.; Parmely, L.; Holton, N.; Loll, B. et al.; Mosammaparast, N.; Bohnsack, M. T.; Urlaub, H.; Wahl, M. C.: Extended DNA threading through a dual-engine motor module of the activating signal co-integrator 1 complex. Nature Communications 14, 1886 (2023)

Kokic, G.; Wagner, F. R.; Chernev, A.; Urlaub, H.; Cramer, P.: Structural basis of human transcription–DNA repair coupling. Nature 598 (7880), pp. 368 - 372 (2021)

Stützer, A.; Welp, L.; Raabe, M.; Sachsenberg, T.; Kappert, C.; Wulf, A.; Lau, A. M.; David, S.-S.; Chernev, A.; Kramer, K. et al.; Politis, A.; Kohlbacher, O.; Fischle, W.; Urlaub, H.: Analysis of protein-DNA interactions in chromatin by UV induced cross-linking and mass spectrometry. Nature Communications 11, 5250 (2020)

Ayoubi, L. E.; Dumay-Odelot, H.; Chernev, A.; Boissier, F.; Minvielle-Sébastia, L.; Urlaub, H.; Fribourg, S.; Teichmann, M.: The hRPC62 subunit of human RNA polymerase III displays helicase activity. Nucleic Acids Research 47 (19), pp. 10313 - 10326 (2019)

Kokic, G.; Chernev, A.; Tegunov, D.; Dienemann, C.; Urlaub, H.; Cramer, P.: Structural basis of TFIIH activation for nucleotide excision repair. Nature Communications 10, 2885 (2019)

Hillen, H. S.; Parshin, A. V.; Agaronyan, K.; Morozov, Y. I.; Graber, J. J.; Chernev, A.; Schwinghammer, K.; Urlaub, H.; Anikin, M.; Cramer, P. et al.; Temiakov, D.: Mechanism of transcription anti-termination in human mitochondria. Cell 171 (5), pp. 1082 - 1093 (2017)

Welp, L. M.; Sachsenberg, T.; Wulf, A.; Chernev, A.; Horokhovskyi, Y.; Neumann, P.; Pašen, M.; Siraj, A.; Raabe, M.; Johannsson, S. et al.; Schmitzova, J.; Netz, E.; Pfeuffer, J.; He, Y.; Fritzemeier, K.; Delanghe, B.; Viner, R.; Vos, S. M.; Cramer, P.; Ficner, R.; Liepe, J.; Kohlbacher, O.; Urlaub, H.: Chemical crosslinking extends and complements UV crosslinking in analysis of RNA/DNA nucleic acid–protein interaction sites by mass spectrometry. bioRxiv (2024)