Publications of J. Söding
All genres
Journal Article (115)
2016
Journal Article
32 (9), pp. 1323 - 1330 (2016)
MMseqs software suite for fast and deep clustering and searching of large protein sequence sets. Bioinformatics
Journal Article
61 (2), pp. 247 - 259 (2016)
Modulations of DNA contacts by linker histones and post-translational modifications determine the mobility and modifiability of nucleosomal H3 tails. Molecular Cell 2015
Journal Article
4, e09410 (2015)
A vocabulary of ancient peptides at the origin of folded proteins. eLife
Journal Article
11 (10), e1004343 (2015)
Automatic prediction of protein 3D Structures by probabilistic multi-template homology modeling. PLoS Computational Biology
Journal Article
83 (10), pp. 1849 - 1858 (2015)
Structure of Ctk3, a subunit of the RNA polymerase II CTD kinase complex, reveals a non-canonical CTD-interacting domain fold. Proteins: Structure, Function, and Bioinformatics
Journal Article
31 (5), pp. 674 - 681 (2015)
Context similarity scoring improves protein sequence alignments in the midnight zone. Bioinformatics
Journal Article
31 (11), pp. 1729 - 1737 (2015)
bbcontacts: Prediction of β-strand pairing from direct coupling patterns. Bioinformatics 2014
Journal Article
30 (21), pp. 3128 - 3130 (2014)
CCMpred-fast and precise prediction of protein residue-residue contacts from correlated mutations. Bioinformatics
Journal Article
55 (5), pp. 745 - 757 (2014)
Transcriptome maps of mRNP biogenesis factors define pre-mRNA recognition. Molecular Cell
Journal Article
511 (7510), pp. E11 - E12 (2014)
Universality of core promoter elements? Nature
Journal Article
3, e03035 (2014)
A structural model of the active ribosome-bound membrane protein insertase YidC. eLife
Journal Article
157 (5), pp. 1037 - 1049 (2014)
RECQL5 controls transcript elongation and suppresses genome instability associated with transcription stress. Cell
Journal Article
10 (4), e1004081 (2014)
In vivo ligands of MDA5 and RIG-I in measles virus-infected cells. PLoS Pathogens
Journal Article
20 (2), pp. 158 - 160 (2014)
In silico-Funktions- und Strukturvorhersagen bei Proteinen. BIOspektrum 2013
Journal Article
9 (11), e1003914 (2013)
Recruitment of TREX to the transcription machinery by its direct binding to the phospho-CTD of RNA polymerase II. PLoS Genetics
Journal Article
155 (5), pp. 1075 - 1087 (2013)
Transcriptome surveillance by selective termination of noncoding RNA synthesis. Cell
Journal Article
14, 248 (2013)
kClust: Fast and sensitive clustering of large protein sequence databases. BMC Bioinformatics
Journal Article
23 (1), pp. 181 - 194 (2013)
P-value-based regulatory motif discovery using positional weight matrices. Genome Research
Journal Article
57, pp. 759 - 765 (2013)
Eph receptors and ephrin class B ligands are expressed at tissue boundaries in Hydra vulgaris. The International Journal of Develomental Biology 2012
Journal Article
28 (24), pp. 3240 - 3247 (2012)
Discriminative modelling of context-specific amino acid substitution probabilities. Bioinformatics