Publications of J. Söding
All genres
Journal Article (110)
41.
Journal Article
31 (5), pp. 674 - 681 (2015)
Context similarity scoring improves protein sequence alignments in the midnight zone. Bioinformatics 42.
Journal Article
31 (11), pp. 1729 - 1737 (2015)
bbcontacts: Prediction of β-strand pairing from direct coupling patterns. Bioinformatics 43.
Journal Article
30 (21), pp. 3128 - 3130 (2014)
CCMpred-fast and precise prediction of protein residue-residue contacts from correlated mutations. Bioinformatics 44.
Journal Article
55 (5), pp. 745 - 757 (2014)
Transcriptome maps of mRNP biogenesis factors define pre-mRNA recognition. Molecular Cell 45.
Journal Article
511 (7510), pp. E11 - E12 (2014)
Universality of core promoter elements? Nature 46.
Journal Article
3, e03035 (2014)
A structural model of the active ribosome-bound membrane protein insertase YidC. eLife 47.
Journal Article
157 (5), pp. 1037 - 1049 (2014)
RECQL5 controls transcript elongation and suppresses genome instability associated with transcription stress. Cell 48.
Journal Article
10 (4), e1004081 (2014)
In vivo ligands of MDA5 and RIG-I in measles virus-infected cells. PLoS Pathogens 49.
Journal Article
20 (2), pp. 158 - 160 (2014)
In silico-Funktions- und Strukturvorhersagen bei Proteinen. BIOspektrum 50.
Journal Article
9 (11), e1003914 (2013)
Recruitment of TREX to the transcription machinery by its direct binding to the phospho-CTD of RNA polymerase II. PLoS Genetics 51.
Journal Article
155 (5), pp. 1075 - 1087 (2013)
Transcriptome surveillance by selective termination of noncoding RNA synthesis. Cell 52.
Journal Article
14, 248 (2013)
kClust: Fast and sensitive clustering of large protein sequence databases. BMC Bioinformatics 53.
Journal Article
23 (1), pp. 181 - 194 (2013)
P-value-based regulatory motif discovery using positional weight matrices. Genome Research 54.
Journal Article
57, pp. 759 - 765 (2013)
Eph receptors and ephrin class B ligands are expressed at tissue boundaries in Hydra vulgaris. The International Journal of Develomental Biology 55.
Journal Article
28 (24), pp. 3240 - 3247 (2012)
Discriminative modelling of context-specific amino acid substitution probabilities. Bioinformatics 56.
Journal Article
484 (7394), pp. 386 - 389 (2012)
DBIRD complex integrates alternative mRNA splicing with RNA polymerase II transcript elongation. Nature 57.
Journal Article
40 (4), pp. 1509 - 1522 (2012)
The MOF-containing NSL complex associates globally with housekeeping genes, but activates only a defined subset. Nucleic Acids Research 58.
Journal Article
40 (W1), pp. W104 - W109 (2012)
The XXmotif web server for eXhaustive, weight matriX-based motif discovery in nucleotide sequences. Nucleic Acids Research 59.
Journal Article
9 (2), pp. 173 - 175 (2012)
HHblits: Lightning-fast iterative protein sequence searching by HMM-HMM alignment. Nature Methods 60.
Journal Article
6 (11), e27595 (2011)
A conserved GA element in TATA-less RNA polymerase II promoters. PLoS One