Publikationen von J. Söding
Alle Typen
Zeitschriftenartikel (115)
Zeitschriftenartikel
47 (17), S. 8961 - 8974 (2019)
Reconstructing complex lineage trees from scRNA-seq data using MERLoT. Nucleic Acids Research
Zeitschriftenartikel
35 (18), S. 3517 - 3519 (2019)
PROSSTT: Probabilistic simulation of single-cell RNA-seq data for complex differentiation processes. Bioinformatics
Zeitschriftenartikel
20 (1), 473 (2019)
HH-suite3 for fast remote homology detection and deep protein annotation. BMC Bioinformatics
Zeitschriftenartikel
35 (16), S. 2856 - 2858 (2019)
MMseqs2 desktop and local web server app for fast, interactive sequence searches. Bioinformatics
Zeitschriftenartikel
10 (1), 2909 (2019)
Lysine/RNA-interactions drive and regulate biomolecular condensation. Nature Communications
Zeitschriftenartikel
16, S. 603 - 606 (2019)
Protein-level assembly increases protein sequence recovery from metagenomic samples manyfold. Nature Methods
Zeitschriftenartikel
8, e47040 (2019)
Transcriptome maps of general eukaryotic RNA degradation factors. eLife
Zeitschriftenartikel
14 (12), e1007856 (2018)
Bayesian multiple logistic regression for case-control GWAS. PLoS Genetics
Zeitschriftenartikel
14 (11), e1006526 (2018)
Synthetic protein alignments by CCMgen quantify noise in residue-residue contact prediction. PLoS Computational Biology
Zeitschriftenartikel
430 (15), S. 2237 - 2243 (2018)
A completely reimplemented MPI Bioinformatics Toolkit with a new HHpred server at its core. Journal of Molecular Biology
Zeitschriftenartikel
8, 9938 (2018)
An analysis and evaluation of the WeFold collaborative for protein structure prediction and its pipelines in CASP11 and CASP12. Scientific Reports
Zeitschriftenartikel
46 (W1), S. W215 - W220 (2018)
The BaMM web server for de-novo motif discovery and regulatory sequence analysis. Nucleic Acids Research
Zeitschriftenartikel
9, 2542 (2018)
Clustering huge protein sequence sets in linear time. Nature Communications
Zeitschriftenartikel
35 (11), S. 1026 - 1028 (2017)
MMseqs2 enables sensitive protein sequence searching for the analysis of massive data sets. Nature Biotechnology
Zeitschriftenartikel
33 (19), S. 3113 - 3114 (2017)
WIsH: Who is the host? Predicting prokaryotic hosts from metagenomic phage contigs. Bioinformatics
Zeitschriftenartikel
66 (1), S. 38 - 49 (2017)
Genome-wide analysis of RNA polymerase II termination at protein-coding genes. Molecular Cell
Zeitschriftenartikel
355 (6322), S. 248 - 249 (2017)
Big-data approaches to protein structure prediction. Science
Zeitschriftenartikel
45 (D1), S. D170 - D176 (2017)
Uniclust databases of clustered and deeply annotated protein sequences and alignments. Nucleic Acids Research
Zeitschriftenartikel
44 (13), S. 6055 - 6069 (2016)
Bayesian Markov models consistently outperform PWMs at predicting motifs in nucleotide sequences. Nucleic Acids Research
Zeitschriftenartikel
44 (W1), S. W410 - W415 (2016)
The MPI bioinformatics Toolkit as an integrative platform for advanced protein sequence and structure analysis. Nucleic Acids Research