Publications of M. Kollmar

Mühlhausen, S.; Kollmar, M.: Whole genome duplication events in plant evolution reconstructed and predicted using myosin motor proteins. BMC Evolutionary Biology 13 (9), 202 (2013)

Hatje, K.; Kollmar, M.: Expansion of the mutually exclusive spliced exome in Drosophila. Nature Communications 4, 2460 (2013)

Samwer, M.; Dehne, H. J.; Spira, F.; Kollmar, M.; Gerlich, D.; Urlaub, H.; Görlich, D.: The nuclear F-actin interactome of Xenopus oocytes reveals an actin-bundling kinesin that is essential for meiotic cytokinesis. EMBO Journal 32 (13), pp. 1886 - 1902 (2013)

Mazur, A.; Hammesfahr, B.; Griesinger, C.; Lee, D.; Kollmar, M.: ShereKhan—calculating exchange parameters in relaxation dispersion data from CPMG experiments. Bioinformatics 29 (14), pp. 1819 - 1820 (2013)

Hatje, K.; Hammesfahr, B.; Kollmar, M.: WebScipio: Reconstructing alternative splice variants of eukaryotic proteins. Nucleic Acids Research 41 (W1), pp. W504 - W509 (2013)

Schneider, R.; Odronitz, F.; Hammesfahr, B.; Hellkamp, M.; Kollmar, M.: Peakr: Simulating solid-state NMR spectra of proteins. Bioinformatics 29 (9), pp. 1134 - 1140 (2013)

Hammesfahr, B.; Odronitz, F.; Mühlhausen, S.; Waack, S.; Kollmar, M.: GenePainter: A fast tool for aligning gene structures of eukaryotic protein families, visualizing the alignments and mapping gene structures onto protein structures. BMC Bioinformatics 14, 77 (2013)

Hatje, K.; Kollmar, M.: A phylogenetic analysis of the Brassicales clade based on an alignment-free sequence comparison method. Frontiers in Plant Science 3, 192 (2012)

Hammesfahr, B.; Kollmar, M.: Evolution of the eukaryotic dynactin complex, the activator of cytoplasmic dynein. BMC Evolutionary Biology 12, 95 (2012)

Eckert, C.; Goretzki, A.; Faberova, M.; Kollmar, M.: Conservation and divergence between cytoplasmic and muscle-specific actin capping proteins: insights from the crystal structure of cytoplasmic Cap32/34 from Dictyostelium discoideum. BMC Structural Biology 12, 12 (2012)

Kollmar, M.; Lbik, D.; Enge, S.: Evolution of the eukaryotic ARP2/3 activators of the WASP family: WASP, WAVE, WASH, and WHAMM, and the proposed new family members WAWH and WAML. BMC Research Notes 5 (1), 88 (2012)

Eckert, C.; Hammesfahr, B.; Kollmar, M.: A holistic phylogeny of the coronin gene family reveals an ancient origin of the tandem-coronin, defines a new subfamily, and predicts protein function. BMC Evolutionary Biology 11, 268 (2011)

Hammesfahr, B.; Odronitz, F.; Hellkamp, M.; Kollmar, M.: diArk 2.0 provides detailed analyses of the ever increasing eukaryotic genome sequencing data. BMC Research Notes 4, 338 (2011)

Pillmann, H.; Hatje, K.; Odronitz, F.; Hammesfahr, B.; Kollmar, M.: Predicting mutually exclusive spliced exons based on exon length, splice site and reading frame conservation, and exon sequence homology. BMC Bioinformatics 12, 270 (2011)

Keller, O.; Kollmar, M.; Stanke, M.; Waack, S.: A novel hybrid gene prediction method employing protein multiple sequence alignments. Bioinformatics 27 (6), pp. 757 - 763 (2011)

Hatje, K.; Keller, O.; Hammesfahr, B.; Pillmann, H.; Waack, S.; Kollmar, M.: Cross-species protein sequence and gene structure prediction with fine-tuned Webscipio 2.0 and Scipio. BMC Research Notes 4 (1), 265 (2011)

Kollmar, M.: Convert of chemical energy into motion. Nachrichten aus der Chemie 57 (10), pp. 994 - 999 (2009)

Odronitz, F.; Becker, S.; Kollmar, M.: Reconstructing the phylogeny of 21 completely sequenced arthropod species based on their motor proteins. BMC Genomics 10, 173 (2009)

Keller, O.; Odronitz, F.; Stanke, M.; Kollmar, M.; Waack, S.: Scipio: Using protein sequences to determine the precise exon/intron structures of genes and their orthologs in closely related species. BMC Bioinformatics 9, 278 (2008)

Odronitz, F.; Kollmar, M.: Comparative genomic analysis of the arthropod muscle myosin heavy chain genes allows ancestral gene reconstruction and reveals a new type of 'partially' processed pseudogene. BMC Molecular Biology 9, 21 (2008)