Publications of J. Söding
All genres
Journal Article (108)
21.
Journal Article
14 (12), e1007856. (2018)
Bayesian multiple logistic regression for case-control GWAS. PLoS Genetics 22.
Journal Article
14 (11), e1006526 (2018)
Synthetic protein alignments by CCMgen quantify noise in residue-residue contact prediction. PLoS Computational Biology 23.
Journal Article
430 (15), pp. 2237 - 2243 (2018)
A completely reimplemented MPI Bioinformatics Toolkit with a new HHpred server at its core. Journal of Molecular Biology 24.
Journal Article
8, 9938 (2018)
An analysis and evaluation of the WeFold collaborative for protein structure prediction and its pipelines in CASP11 and CASP12. Scientific Reports 25.
Journal Article
46 (W1), pp. W215 - W220 (2018)
The BaMM web server for de-novo motif discovery and regulatory sequence analysis. Nucleic Acids Research 26.
Journal Article
9, 2542 (2018)
Clustering huge protein sequence sets in linear time. Nature Communications 27.
Journal Article
35 (11), pp. 1026 - 1028 (2017)
MMseqs2 enables sensitive protein sequence searching for the analysis of massive data sets. Nature Biotechnology 28.
Journal Article
33 (19), pp. 3113 - 3114 (2017)
WIsH: Who is the host? Predicting prokaryotic hosts from metagenomic phage contigs. Bioinformatics 29.
Journal Article
66 (1), pp. 38 - 49 (2017)
Genome-wide analysis of RNA polymerase II termination at protein-coding genes. Molecular Cell 30.
Journal Article
355 (6322), pp. 248 - 249 (2017)
Big-data approaches to protein structure prediction. Science 31.
Journal Article
45 (D1), pp. D170 - D176 (2017)
Uniclust databases of clustered and deeply annotated protein sequences and alignments. Nucleic Acids Research 32.
Journal Article
44 (13), pp. 6055 - 6069 (2016)
Bayesian Markov models consistently outperform PWMs at predicting motifs in nucleotide sequences. Nucleic Acids Research 33.
Journal Article
44 (W1), pp. W410 - W415 (2016)
The MPI bioinformatics Toolkit as an integrative platform for advanced protein sequence and structure analysis. Nucleic Acids Research 34.
Journal Article
32 (9), pp. 1323 - 1330 (2016)
MMseqs software suite for fast and deep clustering and searching of large protein sequence sets. Bioinformatics 35.
Journal Article
61 (2), pp. 247 - 259 (2016)
Modulations of DNA contacts by linker histones and post-translational modifications determine the mobility and modifiability of nucleosomal H3 tails. Molecular Cell 36.
Journal Article
4, e09410 (2015)
A vocabulary of ancient peptides at the origin of folded proteins. eLife 37.
Journal Article
11 (10), e1004343 (2015)
Automatic prediction of protein 3D Structures by probabilistic multi-template homology modeling. PLoS Computational Biology 38.
Journal Article
83 (10), pp. 1849 - 1858 (2015)
Structure of Ctk3, a subunit of the RNA polymerase II CTD kinase complex, reveals a non-canonical CTD-interacting domain fold. Proteins: Structure, Function, and Bioinformatics 39.
Journal Article
31 (5), pp. 674 - 681 (2015)
Context similarity scoring improves protein sequence alignments in the midnight zone. Bioinformatics 40.
Journal Article
31 (11), pp. 1729 - 1737 (2015)
bbcontacts: Prediction of β-strand pairing from direct coupling patterns. Bioinformatics