Publikationen von J. Söding
Alle Typen
Zeitschriftenartikel (107)
21.
Zeitschriftenartikel
14 (11), e1006526 (2018)
Synthetic protein alignments by CCMgen quantify noise in residue-residue contact prediction. PLoS Computational Biology 22.
Zeitschriftenartikel
430 (15), S. 2237 - 2243 (2018)
A completely reimplemented MPI Bioinformatics Toolkit with a new HHpred server at its core. Journal of Molecular Biology 23.
Zeitschriftenartikel
8, 9938 (2018)
An analysis and evaluation of the WeFold collaborative for protein structure prediction and its pipelines in CASP11 and CASP12. Scientific Reports 24.
Zeitschriftenartikel
46 (W1), S. W215 - W220 (2018)
The BaMM web server for de-novo motif discovery and regulatory sequence analysis. Nucleic Acids Research 25.
Zeitschriftenartikel
9, 2542 (2018)
Clustering huge protein sequence sets in linear time. Nature Communications 26.
Zeitschriftenartikel
35 (11), S. 1026 - 1028 (2017)
MMseqs2 enables sensitive protein sequence searching for the analysis of massive data sets. Nature Biotechnology 27.
Zeitschriftenartikel
33 (19), S. 3113 - 3114 (2017)
WIsH: Who is the host? Predicting prokaryotic hosts from metagenomic phage contigs. Bioinformatics 28.
Zeitschriftenartikel
66 (1), S. 38 - 49 (2017)
Genome-wide analysis of RNA polymerase II termination at protein-coding genes. Molecular Cell 29.
Zeitschriftenartikel
355 (6322), S. 248 - 249 (2017)
Big-data approaches to protein structure prediction. Science 30.
Zeitschriftenartikel
45 (D1), S. D170 - D176 (2017)
Uniclust databases of clustered and deeply annotated protein sequences and alignments. Nucleic Acids Research 31.
Zeitschriftenartikel
44 (13), S. 6055 - 6069 (2016)
Bayesian Markov models consistently outperform PWMs at predicting motifs in nucleotide sequences. Nucleic Acids Research 32.
Zeitschriftenartikel
44 (W1), S. W410 - W415 (2016)
The MPI bioinformatics Toolkit as an integrative platform for advanced protein sequence and structure analysis. Nucleic Acids Research 33.
Zeitschriftenartikel
32 (9), S. 1323 - 1330 (2016)
MMseqs software suite for fast and deep clustering and searching of large protein sequence sets. Bioinformatics 34.
Zeitschriftenartikel
61 (2), S. 247 - 259 (2016)
Modulations of DNA contacts by linker histones and post-translational modifications determine the mobility and modifiability of nucleosomal H3 tails. Molecular Cell 35.
Zeitschriftenartikel
4, e09410 (2015)
A vocabulary of ancient peptides at the origin of folded proteins. eLife 36.
Zeitschriftenartikel
11 (10), e1004343 (2015)
Automatic prediction of protein 3D Structures by probabilistic multi-template homology modeling. PLoS Computational Biology 37.
Zeitschriftenartikel
83 (10), S. 1849 - 1858 (2015)
Structure of Ctk3, a subunit of the RNA polymerase II CTD kinase complex, reveals a non-canonical CTD-interacting domain fold. Proteins: Structure, Function, and Bioinformatics 38.
Zeitschriftenartikel
31 (5), S. 674 - 681 (2015)
Context similarity scoring improves protein sequence alignments in the midnight zone. Bioinformatics 39.
Zeitschriftenartikel
31 (11), S. 1729 - 1737 (2015)
bbcontacts: Prediction of β-strand pairing from direct coupling patterns. Bioinformatics 40.
Zeitschriftenartikel
30 (21), S. 3128 - 3130 (2014)
CCMpred-fast and precise prediction of protein residue-residue contacts from correlated mutations. Bioinformatics